View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_7 (Length: 722)
Name: NF0830_low_7
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 11 - 694
Target Start/End: Complemental strand, 11890878 - 11890187
Alignment:
| Q |
11 |
ttatacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaag |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11890878 |
ttatacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaag |
11890779 |
T |
|
| Q |
111 |
cataagcaaatggcttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaaggg |
210 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11890778 |
cataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaaggg |
11890679 |
T |
|
| Q |
211 |
tgaacccttaggtggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11890678 |
tgaacccttaggtggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatc |
11890579 |
T |
|
| Q |
311 |
ttagttttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacctgtcccataacaaatttgaatttagacaaattgaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11890578 |
ttagttttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacctgtcccataacaaatttgaatttagacaaatagaa |
11890479 |
T |
|
| Q |
411 |
atataattgtttttaaaacatattatattggagagtgttattataaagaagctcactaaactatcattgtcaaaccgaatctttatattaggcaggatta |
510 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11890478 |
atataattgtttttaaaacataatatattggagagtgttattataaagaagctcactaaactatcattttcaaaccgaatctttatattaggcaggatta |
11890379 |
T |
|
| Q |
511 |
ttaaattttaatgaggtaaatgat-------atatgtttatttgatatatcaattgttttctttattggacaaggagagacctaaattaagtgtttgtat |
603 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11890378 |
ttaaattttaatgaggtaaatgatatatcatatatgttaatttgatatatcaattgtttactttattggacatggagaaacctaaattaagtgtttgtat |
11890279 |
T |
|
| Q |
604 |
aattt-taagaaacaaagatgttaataaaaacatgtctatatgaatctcattactgaaacttgcagtttagttgtaatggtattgagaaact |
694 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11890278 |
aatttctaagaaacaaagatgttaataaaaacatgtctatatgaatctcattactgaaacttgcagtttagttgtaatggtattgagaaact |
11890187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 11881506 - 11881146
Alignment:
| Q |
17 |
ttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataag |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11881506 |
ttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataag |
11881407 |
T |
|
| Q |
117 |
caaatggcttagctttgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacc |
216 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11881406 |
caaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacc |
11881307 |
T |
|
| Q |
217 |
cttaggtggagcataaagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagtt |
316 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11881306 |
cttaggtggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtt |
11881207 |
T |
|
| Q |
317 |
ttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacctg |
377 |
Q |
| |
|
|| || |||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
11881206 |
tttccataagccttgacaattttgctcccggctttgcatgtcacctcaacaacagctcctg |
11881146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 35 - 377
Target Start/End: Complemental strand, 11903988 - 11903646
Alignment:
| Q |
35 |
ggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctttga |
134 |
Q |
| |
|
|||||||||| | || |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11903988 |
ggtggaggtggtgagttgtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga |
11903889 |
T |
|
| Q |
135 |
gcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11903888 |
gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag |
11903789 |
T |
|
| Q |
235 |
ggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttgatg |
334 |
Q |
| |
|
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
11903788 |
ggtagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgaca |
11903689 |
T |
|
| Q |
335 |
attttgctcccggctttgcatgtcacttcaacaacagcacctg |
377 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
11903688 |
attttgctcccggctttgcatgtcacctcaacaacagctcctg |
11903646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 32 - 385
Target Start/End: Original strand, 52819808 - 52820161
Alignment:
| Q |
32 |
ggaggtggaggtgatttgtagtagtaaggagttggtgaagtcttgggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagctt |
131 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||| || || |||||||||| |||| ||||| |||||||| || ||||||||||| | |
|
|
| T |
52819808 |
ggaggaggaggtgacttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagcct |
52819907 |
T |
|
| Q |
132 |
tgagcactacctcgtacttgtctttggatttcaaggacaactttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcata |
231 |
Q |
| |
|
||||||| || || ||||||||||| ||||| | ||| | ||||| | || ||||| ||||||||||||||||| || | |||||||||||||| |
|
|
| T |
52819908 |
tgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcata |
52820007 |
T |
|
| Q |
232 |
aagggcagccttacacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttg |
331 |
Q |
| |
|
|| || || ||||| ||||||||||| ||||||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52820008 |
tagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggcatactttccattactcttagttttaccgtaagccttg |
52820107 |
T |
|
| Q |
332 |
atgattttgctcccggctttgcatgtcacttcaacaacagcacctgtcccataa |
385 |
Q |
| |
|
||||| || || || ||||||||| | || ||||||||||||||| |||||||| |
|
|
| T |
52820108 |
atgatgttccttccagctttgcatttgacctcaacaacagcacctatcccataa |
52820161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11891007 - 11890953
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11891007 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
11890953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11881773 - 11881719
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11881773 |
tacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
11881719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11891139 - 11891085
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11891139 |
tacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
11891085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11881641 - 11881587
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11881641 |
tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg |
11881587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11881905 - 11881851
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11881905 |
tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg |
11881851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11904102 - 11904048
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11904102 |
tacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg |
11904048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11904234 - 11904180
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11904234 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11904366 - 11904312
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11904366 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11904498 - 11904444
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11904498 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11904630 - 11904576
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11904630 |
tacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg |
11904576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 11904762 - 11904708
Alignment:
| Q |
14 |
tacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg |
68 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11904762 |
tacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtg |
11904708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 11882710 - 11882673
Alignment:
| Q |
25 |
tggtgcgggaggtggaggtgatttgtagtagtaaggag |
62 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
11882710 |
tggtgagggaggtggaggtgatttgtaatagtaaggag |
11882673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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