View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_70 (Length: 364)

Name: NF0830_low_70
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_70
NF0830_low_70
[»] chr4 (6 HSPs)
chr4 (92-141)||(24396762-24396811)
chr4 (93-137)||(52468115-52468159)
chr4 (93-138)||(39329638-39329683)
chr4 (93-137)||(36118691-36118735)
chr4 (93-138)||(27111859-27111904)
chr4 (93-138)||(37746954-37746999)
[»] chr7 (8 HSPs)
chr7 (158-264)||(7398156-7398261)
chr7 (94-138)||(23858897-23858941)
chr7 (96-138)||(23020719-23020761)
chr7 (155-261)||(26917977-26918086)
chr7 (93-134)||(20153030-20153071)
chr7 (93-134)||(27237657-27237698)
chr7 (93-138)||(7398274-7398319)
chr7 (93-134)||(12419731-12419772)
[»] chr5 (11 HSPs)
chr5 (91-141)||(15639274-15639324)
chr5 (94-136)||(26719129-26719171)
chr5 (94-136)||(26988873-26988915)
chr5 (93-138)||(2024872-2024917)
chr5 (101-138)||(14318618-14318655)
chr5 (93-138)||(34307366-34307411)
chr5 (93-137)||(2411913-2411957)
chr5 (93-139)||(10543504-10543550)
chr5 (155-253)||(15639168-15639266)
chr5 (96-138)||(40794560-40794602)
chr5 (93-138)||(606158-606203)
[»] chr8 (5 HSPs)
chr8 (196-255)||(30674701-30674760)
chr8 (93-137)||(34048942-34048986)
chr8 (92-138)||(15078583-15078629)
chr8 (92-138)||(15167647-15167693)
chr8 (93-137)||(8646024-8646068)
[»] chr6 (2 HSPs)
chr6 (155-261)||(4036789-4036894)
chr6 (93-138)||(2477818-2477863)
[»] chr3 (2 HSPs)
chr3 (93-138)||(26279366-26279411)
chr3 (94-138)||(52374490-52374534)
[»] chr2 (9 HSPs)
chr2 (93-138)||(16227603-16227648)
chr2 (93-137)||(11952841-11952885)
chr2 (202-261)||(13800853-13800912)
chr2 (93-138)||(21665935-21665980)
chr2 (94-138)||(29694206-29694250)
chr2 (93-138)||(11912980-11913025)
chr2 (93-138)||(24035780-24035825)
chr2 (93-138)||(37182490-37182535)
chr2 (93-138)||(37622556-37622601)
[»] chr1 (4 HSPs)
chr1 (157-253)||(39135020-39135117)
chr1 (93-138)||(10926178-10926223)
chr1 (93-131)||(39134957-39134995)
chr1 (93-137)||(26803784-26803828)
[»] scaffold1320 (1 HSPs)
scaffold1320 (92-138)||(1179-1225)


Alignment Details
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 24396811 - 24396762
Alignment:
Q  92 agagtgatggtgatggaacgcgtagtatcagagagaaagagaataagtaa 141  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24396811 agagtgatggtgatggaacgcttagtatcagagagaaagagaataagtaa 24396762  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 52468159 - 52468115
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  52468159 gagtgatggtgatggaacgcgtggtatcagagagaaagagaataa 52468115  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 39329638 - 39329683
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||    
T  39329638 gagtgatgatgatagaacgcgtggtatcagagagaaagagaataag 39329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 36118691 - 36118735
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||    
T  36118691 gagtgatggtaatggaaagcgtggtatcagagagaaagagaataa 36118735  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 27111904 - 27111859
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||||||| |||| |||| |||||||||| ||||||||||||    
T  27111904 gagtgatggtgaaggaaagcgtggtatcagagataaagagaataag 27111859  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 37746954 - 37746999
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||| | |||| |||||||||||||||| ||||||    
T  37746954 gagtgatggtgatggtatgcgtggtatcagagagaaagataataag 37746999  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 7398261 - 7398156
Alignment:
Q  158 ggggtagtactaagtcgtattactgggctataattttcttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaagatcc 257  Q
    ||||||||||| ||| ||| ||||||||||||| ||| | ||| ||| |||| ||||| ||| |||||||||||||| ||  |||||||||||||| |||    
T  7398261 ggggtagtacttagtagtactactgggctataaattt-tatttaggcccataccttggggaggctcagctccattgagctcgttgcacaccccaaggtcc 7398163  T
Q  258 gaccttg 264  Q
    |||||||    
T  7398162 gaccttg 7398156  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 23858941 - 23858897
Alignment:
Q  94 agtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  23858941 agtgatggtgatggaacgcgtggtatcagagagaaagagaataag 23858897  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 23020719 - 23020761
Alignment:
Q  96 tgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  23020719 tgatggtgatggaacgcgtggtatcagagagaaagagaataag 23020761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 26917977 - 26918086
Alignment:
Q  155 agtggggtagtactaagtcgtattactgggctataattttctttttt---ggctcatatcttggagagactcagctccattgaactttttgcacacccca 251  Q
    |||||||||||||| ||| ||| ||||| ||||||||||| ||||||   | |||||| ||| ||||  | |||||||||||| || ||||||||||| |    
T  26917977 agtggggtagtacttagtagtactactgagctataatttttttttttttagactcataccttagagatgcccagctccattgagctctttgcacacccta 26918076  T
Q  252 agatccgacc 261  Q
    | ||||||||    
T  26918077 aaatccgacc 26918086  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 20153071 - 20153030
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaa 134  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  20153071 gagtgatggtgatggaacgtgtggtatcagagagaaagagaa 20153030  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 27237657 - 27237698
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaa 134  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  27237657 gagtgatggtgatggaacgcgtggtatcagagagatagagaa 27237698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 7398319 - 7398274
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||| ||||||||||||| |||| ||||||||||| ||||||    
T  7398319 gagtgatgttgatggaacgcgtggtattagagagaaagaaaataag 7398274  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 12419731 - 12419772
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaa 134  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  12419731 gagtgatggtgatggaacgcatggtatcagagagaaaaagaa 12419772  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 15639324 - 15639274
Alignment:
Q  91 cagagtgatggtgatggaacgcgtagtatcagagagaaagagaataagtaa 141  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  15639324 cagagtgatggtgatggaacgtgtggtatcagagagaaagagaataagtaa 15639274  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 26719129 - 26719171
Alignment:
Q  94 agtgatggtgatggaacgcgtagtatcagagagaaagagaata 136  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  26719129 agtgatggtgatggaacgcgtggtatcagagagaaagagaata 26719171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 26988873 - 26988915
Alignment:
Q  94 agtgatggtgatggaacgcgtagtatcagagagaaagagaata 136  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  26988873 agtgatggtgatggaacgcgtggtatcagagagaaagagaata 26988915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 2024872 - 2024917
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||||||||||||||||  |||||||||||||||||||||||    
T  2024872 gagtgatggtgatggaacgcgcggtatcagagagaaagagaataag 2024917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 14318618 - 14318655
Alignment:
Q  101 gtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14318618 gtgatggaacgcgtagtatcagatagaaagagaataag 14318655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 34307366 - 34307411
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||  || |||||||||||||||||||||||    
T  34307366 gagtgatggtgatggaacatgtggtatcagagagaaagagaataag 34307411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 2411957 - 2411913
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||    
T  2411957 gagtgatggtgatggaacacgtggtatcaaagagaaagagaataa 2411913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 10543550 - 10543504
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataagt 139  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||||||    
T  10543550 gagtgatgatgatggaacgcatggtatccgagagaaagagaataagt 10543504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 15639266 - 15639168
Alignment:
Q  155 agtggggtagtactaagtcgtattactgggctataattttcttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaag 253  Q
    |||||||||||||| ||| ||| |||||| |||||||||| ||||| ||| |||| ||||| |||   ||| |||||||| ||  ||||||||| ||||    
T  15639266 agtggggtagtacttagtagtactactggactataattttttttttaggcccataccttggggagctccagttccattgagctccttgcacacctcaag 15639168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 40794560 - 40794602
Alignment:
Q  96 tgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||    
T  40794560 tgatggtaatggaacgcgtggtatcaaagagaaagagaataag 40794602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 606203 - 606158
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||| | || ||||||||| |||||||||||||    
T  606203 gagtgatggtgatggaatgtgtggtatcagagtgaaagagaataag 606158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 30674701 - 30674760
Alignment:
Q  196 ttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaagat 255  Q
    ||||| |||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  30674701 tttttaggctcatatcttggagagacccagttccattgagctttttgtacaccccaagat 30674760  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 34048942 - 34048986
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    
T  34048942 gagtgatggtgatggaacgcgtggtatcggagagaaagagaataa 34048986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 15078629 - 15078583
Alignment:
Q  92 agagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||    
T  15078629 agagtgatggtgatggaacgcgtggtatcagagagaaaaataataag 15078583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 15167647 - 15167693
Alignment:
Q  92 agagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||    
T  15167647 agagtgatggtgatggaacgcgtggtatcagagagaaaaataataag 15167693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 8646068 - 8646024
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    ||||||| |||||| ||||||| |||||||||||||||| |||||    
T  8646068 gagtgatagtgatgaaacgcgtggtatcagagagaaagaaaataa 8646024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 261
Target Start/End: Complemental strand, 4036894 - 4036789
Alignment:
Q  155 agtggggtagtactaagtcgtattactgggctataattttcttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaaga 254  Q
    |||||| ||||||| ||| ||| ||||||||||||||||| ||||  ||||||||  |||| ||| | || ||||||||| | ||||||||||||||||     
T  4036894 agtgggatagtacttagtagtactactgggctataatttt-ttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaagg 4036796  T
Q  255 tccgacc 261  Q
    |||||||    
T  4036795 tccgacc 4036789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 2477818 - 2477863
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||||||| |||| |||| |||||||||| ||||||||||||    
T  2477818 gagtgatggtgaaggaaagcgtggtatcagagataaagagaataag 2477863  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 26279411 - 26279366
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  26279411 gagtgatggtgatggaacgtgtggtatcagagagaaagagaataag 26279366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 52374534 - 52374490
Alignment:
Q  94 agtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||| |||||||| |||| | |||||||    
T  52374534 agtgatggtgatggaacgcgtggtatcagaaagaaggcgaataag 52374490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 16227603 - 16227648
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  16227603 gagtgatggtgatgaaacgcgtggtatcagagagaaagagaataag 16227648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 11952841 - 11952885
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  11952841 gagtgatggtgatggaacgcgtggtaccagagagaaagagaataa 11952885  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 13800853 - 13800912
Alignment:
Q  202 ggctcatatcttggagagactcagctccattgaactttttgcacaccccaagatccgacc 261  Q
    |||||||| |||||| |||| || ||||||||| |||||||||||||||||| |||||||    
T  13800853 ggctcataccttggaaagacccaactccattgagctttttgcacaccccaaggtccgacc 13800912  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 21665935 - 21665980
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||    
T  21665935 gagtgatgatgatggaacgcgtggtatcaaagagaaagagaataag 21665980  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 29694250 - 29694206
Alignment:
Q  94 agtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||    
T  29694250 agtgatggtgatggaacgcgtggtatcagatagaaggagaataag 29694206  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 11912980 - 11913025
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||| ||| |||||||| |||| |||||||||||||||||||||||    
T  11912980 gagttatgatgatggaatgcgtggtatcagagagaaagagaataag 11913025  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 24035780 - 24035825
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||| |||||||| | |||||||||||||| ||||||    
T  24035780 gagtgatggtgatcgaacgcgtggcatcagagagaaagataataag 24035825  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 37182535 - 37182490
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||| ||||||||| |||| || |||||||||||||||||||||||    
T  37182535 gagtaatggtgatgtaacgtgtggtatcagagagaaagagaataag 37182490  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 37622556 - 37622601
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||| ||||||||||||| |||| ||||||||||| ||||||    
T  37622556 gagtgatgatgatggaacgcgtggtatgagagagaaagataataag 37622601  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 39135020 - 39135117
Alignment:
Q  157 tggggtagtactaagtcgtattactgggctataattttcttttt-tggctcatatcttggagagactcagctccattgaactttttgcacaccccaag 253  Q
    |||||||||||| ||| ||| ||||||||||||||||| |||||  ||| |||| ||||| ||| | ||| |||||||| || |||||||||||||||    
T  39135020 tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag 39135117  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 10926178 - 10926223
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||    
T  10926178 gagtgatggtgatggaacgcatggtaccagagagaaagagaataag 10926223  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 39134957 - 39134995
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaaga 131  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  39134957 gagtgatggtgatggaacgcatggtatcagagagaaaga 39134995  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 26803828 - 26803784
Alignment:
Q  93 gagtgatggtgatggaacgcgtagtatcagagagaaagagaataa 137  Q
    |||||||||||||||||| ||  |||| |||||||||||||||||    
T  26803828 gagtgatggtgatggaacacgcggtattagagagaaagagaataa 26803784  T

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Target: scaffold1320 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 1225 - 1179
Alignment:
Q  92 agagtgatggtgatggaacgcgtagtatcagagagaaagagaataag 138  Q
    ||||||||||||||||||||||| |||||||||||||| | ||||||    
T  1225 agagtgatggtgatggaacgcgtggtatcagagagaaaaataataag 1179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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