View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_72 (Length: 361)
Name: NF0830_low_72
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 2821240 - 2820913
Alignment:
| Q |
5 |
tctccaacaatattatacaacaccacaaatgacnnnnnnnnnnnngaagccagagtcgctcagtgaacgggatccactttttgctgattattgcaggatg |
104 |
Q |
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| T |
2821240 |
tctccaaccaaattatacaacaccacaaatgacaaaaagaaaaaagaagccacagtcgctcagtgaatgggatccactttttgctgattattgcaggatg |
2821141 |
T |
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| Q |
105 |
agtggaaatattttactttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaac |
204 |
Q |
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| T |
2821140 |
agaggaaatattttactttgagctgtatcgtggagaaccaaattgctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaac |
2821041 |
T |
|
| Q |
205 |
ttaattaaacacactaaatctttttcaaaagaaaacgaaacatataaaataaaacgtcgatataaaactgaatgctttataagagaagcattgcatgatc |
304 |
Q |
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| T |
2821040 |
ttaattaaacacactaaatctttttcaaaagaaaatgaaacatataaaataaaacgttgatataaaactgaatgctttataagagaagcattgcatgatc |
2820941 |
T |
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| Q |
305 |
agaggaaaggtaccttcatattttgaag |
332 |
Q |
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| T |
2820940 |
agaggaaaggtaccttcatattttgaag |
2820913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 137 - 332
Target Start/End: Complemental strand, 2809828 - 2809624
Alignment:
| Q |
137 |
gagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaaga |
236 |
Q |
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| T |
2809828 |
gagaaccaaatttctgtccgcattgacacaaaaaacaatcaagtcagttatctcatac-----tcagcttaattaaacacattaaatctttttcaaaaca |
2809734 |
T |
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| Q |
237 |
aaacgaaacatataaaataaaacgtcgatataaaactgaatgct--------------ttataagagaagcattgcatgatcagaggaaaggtaccttca |
322 |
Q |
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| T |
2809733 |
aaatgaaacacattaaatgaaacgtcgttataaaactgaatgctagtacaagaatgctttataagagaagcattgcatgatcagaggaaaggtaccttca |
2809634 |
T |
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| Q |
323 |
tattttgaag |
332 |
Q |
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|||||||||| |
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| T |
2809633 |
tattttgaag |
2809624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 2761705 - 2761632
Alignment:
| Q |
120 |
ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcata |
193 |
Q |
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| T |
2761705 |
ctttgagctgtattatggagaaccaaatttctggccacaccgacacaagaaaaaatcaagtcagttatctcata |
2761632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 2799766 - 2799725
Alignment:
| Q |
283 |
ataagagaagcattgcatgatcagaggaaaggtaccttcata |
324 |
Q |
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| T |
2799766 |
ataagagaagcattgcatgatcagaggaaaggtaccttcata |
2799725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 2793475 - 2793422
Alignment:
| Q |
160 |
tgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaa |
213 |
Q |
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| T |
2793475 |
tgacacgagaaacaatttagtcagttatctcatacaattgtcaacttaattaaa |
2793422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 2761614 - 2761570
Alignment:
| Q |
288 |
agaagcattgcatgatcagaggaaaggtaccttcatattttgaag |
332 |
Q |
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| T |
2761614 |
agaagcattacatgatcggatgaaaggtaccttcatattttgaag |
2761570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 2773530 - 2773460
Alignment:
| Q |
142 |
ccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaa |
212 |
Q |
| |
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||||||| |||||| ||||| |||||||||||||| | |||| ||||||||| | ||| ||| |||||||| |
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| T |
2773530 |
ccaaattgctgtccacattggcacaagaaacaatcgactcaggtatctcatacatttgccaatttaattaa |
2773460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 2771605 - 2771531
Alignment:
| Q |
164 |
acaagaaacaatcaagtcagttatctcatagaattgtc----aacttaattaaacacactaaatctttttcaaaa |
234 |
Q |
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| T |
2771605 |
acaagaaacaatttactcagttatctcatacaattgtcggtcaacttaattaaacacgtcaaatctttttcaaaa |
2771531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 2836337 - 2836386
Alignment:
| Q |
283 |
ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaag |
332 |
Q |
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|||||||||||||||| |||||||||| |||||||||| | |||||||| |
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| T |
2836337 |
ataagagaagcattgcgcgatcagaggagaggtaccttcttgttttgaag |
2836386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 2792719 - 2792671
Alignment:
| Q |
283 |
ataagagaagcattgcatgatcagaggaaaggtaccttcatattttgaa |
331 |
Q |
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| T |
2792719 |
ataagagaagtgttgaatgatcagaggaaaggcaccttcatcttttgaa |
2792671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 11114997 - 11115092
Alignment:
| Q |
120 |
ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaaca |
215 |
Q |
| |
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|||||||| ||||| | ||||||| || |||||||| ||| | |||||||||||| |||||||||||||||| ||||||||||| ||||||||| |
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| T |
11114997 |
ctttgagcggtatcattgagaacccaaattctgtccaaatttatacaagaaacaattgagtcagttatctcatacaattgtcaactaaattaaaca |
11115092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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