View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_73 (Length: 355)
Name: NF0830_low_73
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 44993169 - 44993358
Alignment:
| Q |
77 |
ttcctcaaaggagatctaaagttggccgaaacattttgttcaattttcttttatgagatctaaggttgttctttggttcctgcttcaattttcttttgtt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44993169 |
ttcctcaaaggagatctaaagttggccgaaacattttgttcaattttcttttatgagatctaaggttgttctttggttcctgcttcaattttcttttgtt |
44993268 |
T |
|
| Q |
177 |
ctttgtataacattcctcaaaggccagaaacaacaattactaattacaatctcaaactaaactatagaggaataattaacaagataacaa |
266 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
44993269 |
ctttgtataacattcctcaaaggccaaaaacaacaattactaattacaatctcaaactaaactatagaggaataatcaacaagacaacaa |
44993358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 30901589 - 30901778
Alignment:
| Q |
77 |
ttcctcaaaggagatctaaagttggccgaaacattttgttcaattttcttttatgagatctaaggttgttctttggttcctgcttcaattttcttttgtt |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30901589 |
ttcctcaaaggagatctaaagttggccgaaacattttgttcaattttcttttatgagatctaaggttgttctttggttcttgcttcaattttcttttgtt |
30901688 |
T |
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| Q |
177 |
ctttgtataacattcctcaaaggccagaaacaacaattactaattacaatctcaaactaaactatagaggaataattaacaagataacaa |
266 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
30901689 |
ctttgtataacattcctcaaaggccaaaaacaacaattactaattacaatctcaaactaaactatagaggaataatcaacaagacaacaa |
30901778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 30901802 - 30901838
Alignment:
| Q |
290 |
gctggttgtagggcatattcaacaacagagtcaaact |
326 |
Q |
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|||||||||| |||||||||||||||| ||||||||| |
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| T |
30901802 |
gctggttgtaaggcatattcaacaacatagtcaaact |
30901838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 32870814 - 32870768
Alignment:
| Q |
204 |
aaacaacaattactaattacaatctcaaactaaactatagaggaata |
250 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
32870814 |
aaacaacaattacaaattacaatctcaaactaaactaaagaggaata |
32870768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 7987782 - 7987828
Alignment:
| Q |
204 |
aaacaacaattactaattacaatctcaaactaaactatagaggaata |
250 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
7987782 |
aaacaacaattacaaattacaatctcaaactaaactaaagaggaata |
7987828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 50267919 - 50267971
Alignment:
| Q |
196 |
aaggccagaaacaacaattactaattacaatctcaaactaaactatagaggaa |
248 |
Q |
| |
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||||||| ||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
50267919 |
aaggccaaaaacaacaattacaacttacaatctcaaactaaactaaagaggaa |
50267971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 48685735 - 48685771
Alignment:
| Q |
204 |
aaacaacaattactaattacaatctcaaactaaacta |
240 |
Q |
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||||||||||||| | ||||||||||||||||||||| |
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| T |
48685735 |
aaacaacaattacaacttacaatctcaaactaaacta |
48685771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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