View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0830_low_75 (Length: 355)

Name: NF0830_low_75
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0830_low_75
NF0830_low_75
[»] chr2 (6 HSPs)
chr2 (9-326)||(44682993-44683310)
chr2 (187-258)||(39542509-39542580)
chr2 (189-260)||(28945191-28945262)
chr2 (187-260)||(39542922-39542996)
chr2 (185-239)||(19538404-19538458)
chr2 (101-134)||(27556599-27556632)
[»] chr3 (8 HSPs)
chr3 (104-260)||(2617258-2617414)
chr3 (191-260)||(26706808-26706877)
chr3 (187-260)||(27605137-27605210)
chr3 (183-244)||(55128807-55128867)
chr3 (185-260)||(1688888-1688963)
chr3 (185-260)||(23074411-23074486)
chr3 (187-260)||(53119548-53119620)
chr3 (156-240)||(20810362-20810445)
[»] chr6 (8 HSPs)
chr6 (97-244)||(10642640-10642787)
chr6 (166-244)||(22703384-22703461)
chr6 (187-244)||(22713715-22713772)
chr6 (185-244)||(5600990-5601049)
chr6 (156-242)||(17281583-17281669)
chr6 (185-244)||(24192498-24192556)
chr6 (187-260)||(3901933-3902006)
chr6 (187-243)||(12183019-12183075)
[»] chr4 (6 HSPs)
chr4 (154-244)||(34644545-34644635)
chr4 (187-244)||(24490052-24490109)
chr4 (156-241)||(39319621-39319706)
chr4 (215-257)||(10318784-10318826)
chr4 (187-244)||(8083045-8083102)
chr4 (183-244)||(47046325-47046385)
[»] chr1 (3 HSPs)
chr1 (154-241)||(25188293-25188380)
chr1 (185-260)||(37409539-37409613)
chr1 (288-326)||(14724418-14724456)
[»] chr7 (1 HSPs)
chr7 (187-247)||(20932729-20932789)
[»] scaffold0517 (1 HSPs)
scaffold0517 (185-260)||(3582-3656)
[»] chr5 (5 HSPs)
chr5 (165-232)||(1430013-1430080)
chr5 (189-240)||(28857885-28857936)
chr5 (185-260)||(36253845-36253919)
chr5 (152-238)||(31986712-31986798)
chr5 (183-243)||(17504970-17505029)
[»] scaffold0011 (1 HSPs)
scaffold0011 (156-240)||(7036-7119)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 44682993 - 44683310
Alignment:
Q  9 agcataggtgggtacaacatttattttcagtaaaaagaaagccgaatgacttaaattcaagaagtgattttcatttttgagaaatgttaatattgttttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44682993 agcataggtgggtacaacatttattttcagtaaaaagaaagccgaatgacttaaattcaagaagtgattttcatttttgagaaatgttaatattgttttt 44683092  T
Q  109 cgagttgagaaaagtacctttaataaaatttaaattactaaggaaatattatcggattgagttacgattatgttgttttctttaagacgtttcgcagcac 208  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||    
T  44683093 cgagttgagaaaagtacctttaataaaattgaaattactatcgaaatattatcgggttgagttacgattatattgttttctttaaaacgtttcgcggcac 44683192  T
Q  209 tatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaaacaactcgattacg-actgcaccgtaagtaatcgatcgttcaattaaa 307  Q
    |||  ||||||||||||||||||||||||| |  | ||| |  ||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  44683193 tatccgagtttgtgtaaggtagactaacaatcatgttgccttcagg-ttaaaacaactcgattatgtactgcaccgtaagtaatcgatcgttcaattaaa 44683291  T
Q  308 ccactctatatgatacgaa 326  Q
    |||||||||||| ||||||    
T  44683292 ccactctatatggtacgaa 44683310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 39542580 - 39542509
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataa 258  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||||| || |||||||    
T  39542580 tctttaagacgtttcacaacactacttgaatttgtgtaaggtagactaacaactgcgctgcctccaggataa 39542509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 28945191 - 28945262
Alignment:
Q  189 tttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    ||||||||||||||| ||||||   ||||||||| |||||| ||||||||||||| ||| || |||||||||    
T  28945191 tttaagacgtttcgcggcactacacgagtttgtgcaaggtatactaacaaccgcgttgcctccaggataaaa 28945262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 39542922 - 39542996
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggt-agactaacaaccgcgctgcttctaggataaaa 260  Q
    ||||||||||||||| | ||||||  |||||||||||||||| ||||||||||||||  ||| || |||||||||    
T  39542922 tctttaagacgtttcacggcactacatgagtttgtgtaaggtaagactaacaaccgcattgcctccaggataaaa 39542996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 19538404 - 19538458
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaac 239  Q
    |||||||||||| |||| | |||||||  ||||||||| ||||||||||||||||    
T  19538404 tttctttaagacatttcacggcactatccgagtttgtgcaaggtagactaacaac 19538458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 27556599 - 27556632
Alignment:
Q  101 ttgtttttcgagttgagaaaagtacctttaataa 134  Q
    |||||||||||||| |||||||||||||||||||    
T  27556599 ttgtttttcgagttcagaaaagtacctttaataa 27556632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 104 - 260
Target Start/End: Complemental strand, 2617414 - 2617258
Alignment:
Q  104 tttttcgagttgagaaaagtacctttaataaaatttaaattactaaggaa-atattatcggattgagttacgattatgttgttttctttaagacgtttcg 202  Q
    |||||||| || |||||||||||||||||||| || ||| ||| || ||| ||||||  || |||||| || |  |||| | ||||||||||||||||||    
T  2617414 tttttcgaattcagaaaagtacctttaataaa-ttgaaactaccaacgaagatattacagggttgagtcacaaccatgtcgctttctttaagacgtttcg 2617316  T
Q  203 cagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    | |||||| | ||||||||| ||||||||||||||||||||| || || |||||||||    
T  2617315 cggcactactcgagtttgtgcaaggtagactaacaaccgcgccgcctccaggataaaa 2617258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 26706808 - 26706877
Alignment:
Q  191 taagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    |||||||||||||||||||||   |||||||| |||||||||||||||| |||| || || |||||||||    
T  26706808 taagacgtttcgcagcactatccaagtttgtgcaaggtagactaacaactgcgccgcctccaggataaaa 26706877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 27605210 - 27605137
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    |||||||||| |||||||||||||   ||||||||| ||||||||||||||||  | | || ||||||||||||    
T  27605210 tctttaagacatttcgcagcactacccgagtttgtgcaaggtagactaacaactacaccgcctctaggataaaa 27605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 55128807 - 55128867
Alignment:
Q  183 gttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    ||||||||||||||||||||| ||||||  | || ||||||||||||||||| |||||||||    
T  55128807 gttttctttaagacgtttcgcggcactacctaag-ttgtgtaaggtagactagcaaccgcgc 55128867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 1688963 - 1688888
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    |||||||||||||||| || ||||||   ||||||||| |||||||| |||||| ||||| || | ||||||||||    
T  1688963 tttctttaagacgttttgcggcactacccgagtttgtgcaaggtagattaacaatcgcgccgcgtttaggataaaa 1688888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 23074486 - 23074411
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    |||||||||||||||| |||||| ||    ||||||||||||||| |||||||| |||||||| || | |||||||    
T  23074486 tttctttaagacgttttgcagcaatacccaagtttgtgtaaggtatactaacaaacgcgctgcatccaagataaaa 23074411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 53119548 - 53119620
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    ||||||||||||||||| |||||| |  |||| ||| ||||||||||||||||| ||| |  ||||||||||||    
T  53119548 tctttaagacgtttcgcggcactactcaagtt-gtgcaaggtagactaacaaccacgccgtctctaggataaaa 53119620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 20810362 - 20810445
Alignment:
Q  156 attatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaacc 240  Q
    |||||||| |||||| ||||  | || ||| ||||||||||||||||||||||||    || ||||| |||||||||||||||||    
T  20810362 attatcgggttgagtcacgaccaggtcgttctctttaagacgtttcgcagcactaccctag-ttgtgcaaggtagactaacaacc 20810445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 10642640 - 10642787
Alignment:
Q  97 aatattgtttttcgagttgagaaaagtacctttaataaaatttaaattactaaggaa-atattatcggattgagttacgattatgttgttttctttaaga 195  Q
    |||||||||||||||||| |||||||||||||||| ||| |  ||| ||| |  ||| |||||| ||| |||||| ||||  |||| | |||||||||||    
T  10642640 aatattgtttttcgagtttagaaaagtacctttaa-aaattcaaaactaccatcgaagatattaccgggttgagtcacgacaatgtcgctttctttaaga 10642738  T
Q  196 cgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    |||||||  |||||||  ||| ||||| |||||||||||||||||||||    
T  10642739 cgtttcgtggcactatccgaggttgtgcaaggtagactaacaaccgcgc 10642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 22703461 - 22703384
Alignment:
Q  166 tgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||  | || ||||| ||||||||||| |||||||||    
T  22703461 tgagtcacgattatgtcgttttctttaagacgtttcgcggcactacctaag-ttgtgcaaggtagactagcaaccgcgc 22703384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 22713715 - 22713772
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    |||||||||||||| ||||||||| | ||||||||| ||| |||||||||||||||||    
T  22713715 tctttaagacgttttgcagcactactcgagtttgtgcaagatagactaacaaccgcgc 22713772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 5601049 - 5600990
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    |||||||||||||||||||  |||||   |||||||||||||||||| ||||||||||||    
T  5601049 tttctttaagacgtttcgcgacactacccgagtttgtgtaaggtagaataacaaccgcgc 5600990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 17281669 - 17281583
Alignment:
Q  156 attatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgc 242  Q
    |||| ||| |||||| ||||  |||| | ||||||||||||||||||| ||||||   |  ||||||||||||||||||||||||||    
T  17281669 attaccgggttgagtcacgagcatgtcgctttctttaagacgtttcgcggcactacccgtatttgtgtaaggtagactaacaaccgc 17281583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 24192556 - 24192498
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    ||||||||||||||||||| ||||||  |||| ||||| ||||||||||| |||||||||    
T  24192556 tttctttaagacgtttcgcggcactacctgag-ttgtgcaaggtagactagcaaccgcgc 24192498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 3901933 - 3902006
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    |||||||||||||| || |||||||   |||||||| |||||||| || ||||||||| || || |||||||||    
T  3901933 tctttaagacgttttgcggcactatccaagtttgtgcaaggtagaataccaaccgcgccgcctccaggataaaa 3902006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 12183075 - 12183019
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcg 243  Q
    ||||||||||||||||| ||||||    |||||||| || |||||||||||||||||    
T  12183075 tctttaagacgtttcgcggcactacccaagtttgtgcaatgtagactaacaaccgcg 12183019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 34644545 - 34644635
Alignment:
Q  154 atattatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    |||||| ||| |||||| ||||| |||| | |||||||||||||||||||  ||||||  |||||||||||||||| ||||||||||||||    
T  34644545 atattaccgggttgagtcacgatcatgtcgctttctttaagacgtttcgcgacactatccgagtttgtgtaaggtaaactaacaaccgcgc 34644635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 24490052 - 24490109
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    |||||||||||||||||  ||||| |  |||||||| |||||||||||||||||||||    
T  24490052 tctttaagacgtttcgcgacactaatcaagtttgtgcaaggtagactaacaaccgcgc 24490109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 39319621 - 39319706
Alignment:
Q  156 attatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccg 241  Q
    |||| ||| |||||| ||||| | || | ||||||||||||||||| |  ||||| | ||||||||| ||||||||||||||||||    
T  39319621 attaccgggttgagtcacgatcaggtcgctttctttaagacgtttcacgacactactcgagtttgtgcaaggtagactaacaaccg 39319706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 10318826 - 10318784
Alignment:
Q  215 agtttgtgtaaggtagactaacaaccgcgctgcttctaggata 257  Q
    |||||||| ||||||||||||||||||||| || |||||||||    
T  10318826 agtttgtgcaaggtagactaacaaccgcgccgcctctaggata 10318784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 8083102 - 8083045
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    ||||||||||||||| | |||||||   |||| ||| |||||||||||||||||||||    
T  8083102 tctttaagacgtttcacggcactatccaagttagtgcaaggtagactaacaaccgcgc 8083045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 47046385 - 47046325
Alignment:
Q  183 gttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgc 244  Q
    ||||||||||||||||||||| ||||||  | || ||||| ||||||||||| |||||||||    
T  47046385 gttttctttaagacgtttcgcggcactacctaag-ttgtgcaaggtagactagcaaccgcgc 47046325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 25188380 - 25188293
Alignment:
Q  154 atattatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccg 241  Q
    |||||||||  |||||| || || | |||| |||||| |||| ||||||| |||||| ||||||||||| ||||||||||||||||||    
T  25188380 atattatcgtgttgagtcactatcaggttgctttcttgaagaagtttcgcggcactacttgagtttgtgcaaggtagactaacaaccg 25188293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 37409613 - 37409539
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    ||||||||||||||||||| ||||||  | |||| ||| ||||||||||| ||||||||| | ||| |||||||||    
T  37409613 tttctttaagacgtttcgcggcactacctaagtt-gtgcaaggtagactagcaaccgcgccgtttccaggataaaa 37409539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 14724418 - 14724456
Alignment:
Q  288 taatcgatcgttcaattaaaccactctatatgatacgaa 326  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  14724418 taatcgatcgttcgattaaaccactctatatggtacgaa 14724456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 20932789 - 20932729
Alignment:
Q  187 tctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgc 247  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||  ||| ||||||| ||||    
T  20932789 tctttaagatgtttcgcggcactatttgaatttgtgtaaggtaagctatcaaccgcactgc 20932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 3582 - 3656
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    ||||||||||||||||||| ||||||  | |||| ||| ||||||||||| ||||||||| | ||| |||||||||    
T  3582 tttctttaagacgtttcgcggcactacctaagtt-gtgcaaggtagactagcaaccgcgccgtttccaggataaaa 3656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 1430080 - 1430013
Alignment:
Q  165 ttgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagac 232  Q
    ||||||||||| ||||| ||||||||||||||||||| |  || |||  ||||||||| |||||||||    
T  1430080 ttgagttacgactatgtcgttttctttaagacgtttcacgacaatatccgagtttgtgcaaggtagac 1430013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 28857885 - 28857936
Alignment:
Q  189 tttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaacc 240  Q
    ||||||||||||||| ||||||  |||||||||| ||||||||| |||||||    
T  28857885 tttaagacgtttcgcggcactacctgagtttgtgcaaggtagaccaacaacc 28857936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 36253845 - 36253919
Alignment:
Q  185 tttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcgctgcttctaggataaaa 260  Q
    ||||||||||||||||||| ||||||  | |||| ||| ||||||||||| ||||||||| || || |||||||||    
T  36253845 tttctttaagacgtttcgcggcactacctaagtt-gtgcaaggtagactagcaaccgcgccgcctccaggataaaa 36253919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 31986712 - 31986798
Alignment:
Q  152 aaatattatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaa 238  Q
    |||||||||||| |||||| ||||| | || | |||||||||||||||||||  |||||   |||||| || |||||||| ||||||    
T  31986712 aaatattatcgggttgagtcacgataaggtcgctttctttaagacgtttcgcgacactacccgagtttatgcaaggtagattaacaa 31986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 17504970 - 17505029
Alignment:
Q  183 gttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaaccgcg 243  Q
    ||||||||||||||||||||| ||||||  | || ||||| ||||||||||| ||||||||    
T  17504970 gttttctttaagacgtttcgcggcactacctaag-ttgtgcaaggtagactagcaaccgcg 17505029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 7036 - 7119
Alignment:
Q  156 attatcggattgagttacgattatgttgttttctttaagacgtttcgcagcactatttgagtttgtgtaaggtagactaacaacc 240  Q
    |||||||| |||||||||||  | || ||| ||||||||||||||||| ||||||    || ||||| |||||||||||||||||    
T  7036 attatcgggttgagttacgaccaggtcgttctctttaagacgtttcgcggcactacccaag-ttgtgcaaggtagactaacaacc 7119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3256 times since January 2019
Visitors: 6172