View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_78 (Length: 353)
Name: NF0830_low_78
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 27990175 - 27990415
Alignment:
| Q |
9 |
caacaatatgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttgatgt |
108 |
Q |
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| T |
27990175 |
caacaaaatgatacaactcaccatcaaattatagtttagcttattatatttctt----atatcatacgctacctatagttagttattagttagttgatgt |
27990270 |
T |
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| Q |
109 |
gattctctacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttg |
208 |
Q |
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| T |
27990271 |
gattctctacatacgagcacatagctatcatagaccatatactaacactataaatgttagttgtaacttcaacattcattaagagaaatgagtttgtttg |
27990370 |
T |
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| Q |
209 |
attaattttctctctcacaatagtcatttctaagaacttaaacaa |
253 |
Q |
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| T |
27990371 |
attaattttctctctcacaatagtcatttctaagaacttaaacaa |
27990415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 6 - 253
Target Start/End: Original strand, 28000628 - 28000865
Alignment:
| Q |
6 |
ctccaacaatatgatacaactcaccatcaaattatagtttaacttattatatttcttgtatatatcatacgctacctatagttagttattagttagttga |
105 |
Q |
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| T |
28000628 |
ctccaacaaaaggatacaactcaccatcaaactatagtttagcttattatatttctt----atatcacacgctacctagagttagtt-----------ga |
28000712 |
T |
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| Q |
106 |
tgtgattctctacatacgagcacat----agctatcatagaccatatactaac-actataaatgttagttgtaacttcaacattcattaagagaaatgag |
200 |
Q |
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| T |
28000713 |
tgtgattttctgcataagagcacatgattagctatcatataccatatactaactactataaacgttagttgtaacttcaacattcattaagagaaatgag |
28000812 |
T |
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| Q |
201 |
tttgtttgattaattttctctctcacaatagtcatttctaagaacttaaacaa |
253 |
Q |
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| T |
28000813 |
tttgtttgattaattttctctctcacaatagtcatttctaagaacttaaacaa |
28000865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 248 - 347
Target Start/End: Complemental strand, 39093488 - 39093389
Alignment:
| Q |
248 |
aaacaaaggccccttcggcatctctaatacaatatatacataattgaatctcaaaattgttgagacacgaaaattaaaatttggttaatgacataagagt |
347 |
Q |
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| T |
39093488 |
aaacaaaggccccttgggcatctctaatacaatatatacataattgaatctcaaaattgttgagacacgaaaattaaaatttggttaatgacataagagt |
39093389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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