View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_84 (Length: 342)
Name: NF0830_low_84
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 30090301 - 30090044
Alignment:
| Q |
7 |
ggagcacagactgttagaagtcctattgtagtggcaccaaggggaattatatgagctttcaagtgttttttcccctcatttttctgcaccttctgcaatg |
106 |
Q |
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| T |
30090301 |
ggagcacacactgttagaagtcctattgtagtggcaccaaggggaattatatgagctttcaagtgttttttcccctcatttttctgcaccttctgcaatg |
30090202 |
T |
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| Q |
107 |
acatgatatgcaatattatgtacttttcttacactctttaaaaacactcattcaaatgcaaccttatgatgtgtttggttgtcattatcttggtttttta |
206 |
Q |
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| T |
30090201 |
acatgatatgcaatattgtgtacttttcttacactctttaaaaacactcattcaaatgcaaccttatgatgtgtttggttgtcattatcttggtttttta |
30090102 |
T |
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| Q |
207 |
ttttcacaaactaattctacatcttcatgttttttgttctttaactactagttataac |
264 |
Q |
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| T |
30090101 |
ttttcacaaactaattctacatcttcatgttttttgttctttaactactagttataac |
30090044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 30087049 - 30086979
Alignment:
| Q |
7 |
ggagcacagactgttagaagtcctattgtagtggcaccaaggggaattatatgagctttcaagtgtttttt |
77 |
Q |
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| T |
30087049 |
ggagtacacactgttagaagtcctattgtagtggcaccaactggaattatatgagctttcaagtgtttttt |
30086979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 30100615 - 30100654
Alignment:
| Q |
7 |
ggagcacagactgttagaagtcctattgtagtggcaccaa |
46 |
Q |
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| T |
30100615 |
ggagcacacattgttagaagtcctattgtagtggcaccaa |
30100654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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