View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_87 (Length: 335)
Name: NF0830_low_87
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 33658648 - 33658965
Alignment:
| Q |
6 |
aggagcagagattgattgagaagaatctattaggcaacttgctaaattacaaggatgaaaatggacaaactctaacagatgaagaaattgctgataatgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33658648 |
aggagcagagattgattgagaagaatctattaggcaacttcttaaactacaaggatgaaaatggacaaactctaacagatgaagaaattgctgataatgt |
33658747 |
T |
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| Q |
106 |
gattggagtactatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33658748 |
gattggagtactatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaa |
33658847 |
T |
|
| Q |
206 |
gtaagtgttcttattggtcc-----------------tcaaaatctttgtaggccataagtgttgaaaatcattaataattattgattcaactaataaaa |
288 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33658848 |
gtaagtgttcttattggtcctcttacaaagatttttttcaaaatctttgtaggccataagtgttgaaaatcattaataattattgattcaactaataaaa |
33658947 |
T |
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| Q |
289 |
ctgttttgcagacagagc |
306 |
Q |
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|||||||| ||||||||| |
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| T |
33658948 |
ctgttttgtagacagagc |
33658965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 33699334 - 33699542
Alignment:
| Q |
6 |
aggagcagagattgattgagaagaatctattaggcaacttgctaaattacaaggatgaaaatggacaaactctaacagatgaagaaattgctgataatgt |
105 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||||| | ||| |||| |||||||||||||| || ||| ||| ||||| ||| ||||||||||||| |
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| T |
33699334 |
aggagcaaagattgaatgagaaggatctattaggccatttgttaaactacaaggatgaaaaagggaaaatgttaagtgatgaggaagttgctgataatgt |
33699433 |
T |
|
| Q |
106 |
gattggagtactatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699434 |
gattggagtactatttgcagctcaagatactacagcaagtgttcttacttggattctcaagtatcttcatgatcaccagaaacttcttgaagccataaaa |
33699533 |
T |
|
| Q |
206 |
gtaagtgtt |
214 |
Q |
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||||||||| |
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| T |
33699534 |
gtaagtgtt |
33699542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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