View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_9 (Length: 715)
Name: NF0830_low_9
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 48 - 552
Target Start/End: Complemental strand, 28540006 - 28539500
Alignment:
| Q |
48 |
gttcatggaagctgttgttggctctgttgatgttgattcaatcggtatcggtgttccgacgagactgccaatctgagtcatgctcaaggccatcaaactt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28540006 |
gttcatggaagctgttgttggctctgttgatgttgattcaatcggtatcggtgttccgacgagactgccaatctgagtcatgttcaaggccatcaaactt |
28539907 |
T |
|
| Q |
148 |
gaaagaattggaagaaaatgtatagcagaaatttgaaaaagtgtatgaaaa-ttgtcttgtgttttactttgctggacacgggtattagaaatggaaaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28539906 |
gaaagaattggaagaaaatgtatagcagaaatttgaaaaagtgtatgaaaaattgtcttgtgttttactttgctggacacgggtattagaaatggaaaga |
28539807 |
T |
|
| Q |
247 |
aagaagtagagatgagagtttataaggaaagggaggggggttgaggataagatnnnnnnnttta-tatttttgatatgaccgttggttaagtgacacgtg |
345 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
28539806 |
aagaagcagagatgagagtttataaggaaagggaggggggttgaagataagataaaaaaaattaatatttttgatatgaccgttggttaagtgacacgcg |
28539707 |
T |
|
| Q |
346 |
taagagtgttgcgtggaagaatgatggacggtagagtacaggaacggtggagatggtgtgattggttgaagaaatgaacggtgagatatgtgttacgcgt |
445 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28539706 |
taagagtgttgcgtggaggaatgatggacggtagagtacaggaacggtggagatggtgtgattggttgaagaaatgaacggtgagatatgtgttacgcgt |
28539607 |
T |
|
| Q |
446 |
gaagataccagaaaatgcgatgctgaaagattggtgaatatgtgaaaggatgacacgtgttggaaagtgatggatcacgtgtcgtgacggtggttttgga |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28539606 |
gaagataccagaaaatgcgatgctgaaagattggtgaatatgtgaaaggatgacacgtgttggaaagtgatggatcacgtgtcgtgacggtggttttgga |
28539507 |
T |
|
| Q |
546 |
ttgtgta |
552 |
Q |
| |
|
||||||| |
|
|
| T |
28539506 |
ttgtgta |
28539500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 613 - 660
Target Start/End: Complemental strand, 28539439 - 28539392
Alignment:
| Q |
613 |
ttgcacgtgtactgttgaaccagtggaaatagaaggaagggaagatga |
660 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28539439 |
ttgcacgtgtactgatgaaccagtggaaatagaaggaagggaagatga |
28539392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 24766377 - 24766423
Alignment:
| Q |
7 |
tgatgtttaagatttgtctaagcctccagaattggttttgggttcat |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24766377 |
tgatgtttaagatttgtctaagcctccagaattggttttgggttcat |
24766423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 705 times since January 2019
Visitors: 6130