View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_94 (Length: 316)
Name: NF0830_low_94
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 38287378 - 38287595
Alignment:
| Q |
28 |
gtctgtgcgtatgatatcactttgtactggttccaaattgtataggagtggtactactctacccttttccattttccttaatacatatatagacacacaa |
127 |
Q |
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| T |
38287378 |
gtctgtgcgtatgatatcactttgtactggttccaaattgtataggagtggtactactctacccttttccattttccttaatacgtatatagacacacaa |
38287477 |
T |
|
| Q |
128 |
atacacacacattcatgtcaggagaaaatatactcgtaaattaagaatgcaatannnnnnngtgttaaccctctggtttctcaggaaaaagaggttcggt |
227 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
38287478 |
ataaacacacattcatg-caggagaaaatatactcgtaaattaagaatgcaata-ttttttgtgttaaccctctggtttctcagaaaaaagaggttcggt |
38287575 |
T |
|
| Q |
228 |
catcaggcaagtataatcta |
247 |
Q |
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|||||| |||| |||||||| |
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| T |
38287576 |
catcagacaaggataatcta |
38287595 |
T |
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