View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0830_low_96 (Length: 313)
Name: NF0830_low_96
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_96 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 7130985 - 7130911
Alignment:
| Q |
16 |
agagggggcttttggatagccacaagaaaacactaatgatatatgggacaagatgacacatgggattacaaaagt |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7130985 |
agagggggcttttggatagccacaagaaaacactaatgttatatgggacaagatgacacatgggattacaaaagt |
7130911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 17083889 - 17083998
Alignment:
| Q |
92 |
gtggcgtttaatttggactcaccgaaaaattggtccaacttgaacccattaactt-aaaccattgatcaaataagatgtatagattttatgacagtcctt |
190 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||| | ||||| | |
|
|
| T |
17083889 |
gtggcgtttaatttggacccattgaaaaattggtccaacttggacccattaacttaaaaccattgatcaaataagatgtacatattttacggtagtccat |
17083988 |
T |
|
| Q |
191 |
ccacacatga |
200 |
Q |
| |
|
|||||||||| |
|
|
| T |
17083989 |
ccacacatga |
17083998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 38701069 - 38701152
Alignment:
| Q |
97 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatg |
181 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38701069 |
gtttaatttggac-cattgaaaaattggtctaacttgaaccaattaacttaaaccattgatcaaataggatgtatagattttatg |
38701152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 54385236 - 54385367
Alignment:
| Q |
97 |
gtttaatttggactcaccgaaaaattggtccaacttgaacccattaacttaaaccattgatcaaataagatgtatagattttatgacagtccttccacac |
196 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||| || ||| |
|
|
| T |
54385236 |
gtttaatttggacccattgaaaaattgatccaacttggaccaattaacttagaccattgatcaaataagatgtatagattttatagtagtccatctgcac |
54385335 |
T |
|
| Q |
197 |
atgattaaactctctcactcttccagcatctct |
229 |
Q |
| |
|
|||| | ||||||||||||||||| |||||| |
|
|
| T |
54385336 |
atgagt-tgctctctcactcttccagtatctct |
54385367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 9257338 - 9257408
Alignment:
| Q |
20 |
ggggcttttggatagccacaagaaaacactaatgatatatgggacaagatgacacatgggattacaaaagt |
90 |
Q |
| |
|
|||| |||| |||| ||||| | || |||||||||||| |||||||||||| |||||| ||||| |||||| |
|
|
| T |
9257338 |
gggggttttagataaccacatggaagcactaatgatatgtgggacaagatggcacatgagattaaaaaagt |
9257408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2398 times since January 2019
Visitors: 6162