View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0830_low_97 (Length: 312)
Name: NF0830_low_97
Description: NF0830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0830_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 29519590 - 29519878
Alignment:
| Q |
1 |
cctgtgataattgcagtgaggttgcttgcatcaattccttgagtaacttgttcagctgttgtagaggatccaaatccacttggtccagccatgcccgtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519590 |
cctgtgataattgcagtgaggttgcttgcatcaattccttgagtaacttgttcagctgttgtagaggatccaaatccacttggtccagccatgcccgtaa |
29519689 |
T |
|
| Q |
101 |
ccaacgagaaaatacccaccattttgattctgaagagaacaatcaaataaatctctcttgattgaaagctctaagttattataaattattttttccttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
29519690 |
ccaacgagaaaatacccaccattttgattctgaagagaataatcaaataaatctctcttgattgaaagctctaagctatt----attattttttccttga |
29519785 |
T |
|
| Q |
201 |
tgtg----------nnnnnnnnnnnncaaatgaagataacgtgtgggatgaatataatatgattgagataagaagaaagaagaattaatgagg |
283 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29519786 |
tgtgtgtatatatatatatatatatacaaatgaagataacgtgtgggatgaataaaatatgattgagataagaagaaagaagaattaatgagg |
29519878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 40099052 - 40098961
Alignment:
| Q |
1 |
cctgtgataattgcagtgaggttgcttgcatcaattccttgagtaacttgttcagctgttgtagaggatccaaatccacttggtccagccat |
92 |
Q |
| |
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|||||||||||||| || |||||||| |||||||||||||||||||| || || || |||| || |||||||| |||||||| |||||||| |
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| T |
40099052 |
cctgtgataattgcggtaaggttgctagcatcaattccttgagtaacctgctctgcagttgaagctgatccaaacccacttggaccagccat |
40098961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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