View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_12 (Length: 503)

Name: NF0831_high_12
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_12
NF0831_high_12
[»] chr2 (23 HSPs)
chr2 (30-492)||(37986751-37987217)
chr2 (399-478)||(23354646-23354725)
chr2 (399-486)||(38919184-38919271)
chr2 (401-466)||(25544479-25544544)
chr2 (399-478)||(23354989-23355068)
chr2 (354-457)||(24011043-24011146)
chr2 (403-469)||(10535757-10535823)
chr2 (415-485)||(12748663-12748733)
chr2 (438-478)||(12464882-12464922)
chr2 (370-454)||(11307963-11308053)
chr2 (336-417)||(4207909-4207989)
chr2 (395-472)||(19573970-19574047)
chr2 (440-485)||(38117194-38117239)
chr2 (446-485)||(26769490-26769529)
chr2 (438-485)||(42205868-42205915)
chr2 (440-478)||(15972859-15972897)
chr2 (429-478)||(10735202-10735251)
chr2 (422-475)||(12668440-12668493)
chr2 (422-478)||(12940952-12941008)
chr2 (422-478)||(18841030-18841086)
chr2 (422-478)||(20539691-20539747)
chr2 (422-470)||(30335411-30335459)
chr2 (361-405)||(41849354-41849398)
[»] chr7 (21 HSPs)
chr7 (378-478)||(4017767-4017867)
chr7 (384-472)||(38804534-38804622)
chr7 (363-466)||(7133236-7133339)
chr7 (399-493)||(29812658-29812750)
chr7 (376-479)||(23930204-23930307)
chr7 (400-478)||(43249979-43250057)
chr7 (363-457)||(5938479-5938573)
chr7 (408-457)||(23751907-23751956)
chr7 (421-478)||(30516373-30516430)
chr7 (422-478)||(27945027-27945083)
chr7 (394-457)||(10230062-10230125)
chr7 (418-472)||(23128674-23128728)
chr7 (438-475)||(927870-927907)
chr7 (408-457)||(22683758-22683807)
chr7 (422-479)||(22868027-22868084)
chr7 (442-483)||(29788689-29788729)
chr7 (442-478)||(6630949-6630985)
chr7 (422-478)||(9408351-9408407)
chr7 (422-478)||(15902808-15902864)
chr7 (422-478)||(23191882-23191938)
chr7 (422-478)||(32308106-32308162)
[»] chr5 (19 HSPs)
chr5 (378-457)||(43554528-43554607)
chr5 (363-478)||(26205718-26205833)
chr5 (371-457)||(25863211-25863297)
chr5 (415-473)||(42469212-42469270)
chr5 (395-455)||(39695989-39696049)
chr5 (384-477)||(14574029-14574121)
chr5 (363-478)||(21137675-21137788)
chr5 (408-477)||(7997169-7997238)
chr5 (440-485)||(31084302-31084347)
chr5 (408-465)||(31264437-31264494)
chr5 (422-477)||(24906318-24906373)
chr5 (423-478)||(36642780-36642835)
chr5 (440-478)||(9449455-9449493)
chr5 (420-478)||(9878047-9878105)
chr5 (418-466)||(2577193-2577241)
chr5 (422-478)||(14674255-14674311)
chr5 (418-478)||(15410461-15410521)
chr5 (401-485)||(35252310-35252392)
chr5 (438-478)||(41558716-41558756)
[»] chr3 (33 HSPs)
chr3 (339-472)||(25074781-25074914)
chr3 (354-478)||(25651980-25652104)
chr3 (391-478)||(14223839-14223926)
chr3 (394-467)||(25892457-25892530)
chr3 (378-463)||(27903633-27903718)
chr3 (398-495)||(41319303-41319400)
chr3 (408-472)||(15864825-15864889)
chr3 (422-485)||(20503444-20503507)
chr3 (385-463)||(25326427-25326505)
chr3 (408-465)||(34189426-34189483)
chr3 (377-457)||(12704629-12704709)
chr3 (394-472)||(8903424-8903501)
chr3 (420-485)||(10954930-10954996)
chr3 (408-478)||(24205044-24205114)
chr3 (440-485)||(21479097-21479142)
chr3 (395-456)||(34307770-34307831)
chr3 (440-485)||(40052311-40052356)
chr3 (441-485)||(14747540-14747584)
chr3 (423-478)||(10335304-10335359)
chr3 (418-485)||(20691298-20691365)
chr3 (378-457)||(21211295-21211374)
chr3 (440-483)||(26290352-26290395)
chr3 (448-486)||(39756214-39756252)
chr3 (399-457)||(52369782-52369840)
chr3 (410-495)||(1830312-1830397)
chr3 (408-457)||(3730168-3730217)
chr3 (422-478)||(8383243-8383299)
chr3 (422-478)||(10268503-10268559)
chr3 (422-478)||(15796311-15796367)
chr3 (423-467)||(16789668-16789712)
chr3 (438-466)||(26665134-26665162)
chr3 (395-478)||(29508430-29508514)
chr3 (422-478)||(55401061-55401117)
[»] chr6 (34 HSPs)
chr6 (378-478)||(17168436-17168536)
chr6 (363-478)||(26247412-26247526)
chr6 (363-484)||(34446545-34446666)
chr6 (402-478)||(6389729-6389805)
chr6 (401-485)||(19602177-19602261)
chr6 (402-478)||(2153884-2153960)
chr6 (438-483)||(4937573-4937618)
chr6 (438-483)||(4953282-4953327)
chr6 (408-466)||(13689196-13689254)
chr6 (440-485)||(12868710-12868755)
chr6 (422-478)||(5732527-5732583)
chr6 (422-478)||(7938102-7938158)
chr6 (422-478)||(16833294-16833350)
chr6 (411-478)||(3398605-3398671)
chr6 (411-478)||(7625108-7625175)
chr6 (418-477)||(9024189-9024248)
chr6 (377-451)||(4420156-4420225)
chr6 (409-471)||(6299505-6299567)
chr6 (409-471)||(6306315-6306377)
chr6 (440-478)||(8777008-8777046)
chr6 (432-478)||(10760868-10760914)
chr6 (440-485)||(5626731-5626776)
chr6 (408-457)||(12235522-12235571)
chr6 (424-477)||(17422274-17422327)
chr6 (434-478)||(677823-677867)
chr6 (422-478)||(7996395-7996451)
chr6 (422-478)||(8022350-8022406)
chr6 (446-478)||(8365560-8365592)
chr6 (422-478)||(10770691-10770747)
chr6 (422-478)||(12696310-12696366)
chr6 (422-478)||(16766683-16766739)
chr6 (422-478)||(17841606-17841662)
chr6 (440-476)||(32313392-32313428)
chr6 (422-478)||(34595120-34595176)
[»] chr1 (19 HSPs)
chr1 (354-457)||(42004897-42004999)
chr1 (390-457)||(6936385-6936452)
chr1 (422-485)||(22881633-22881696)
chr1 (338-456)||(20157283-20157401)
chr1 (392-466)||(40747760-40747834)
chr1 (363-485)||(17831486-17831611)
chr1 (441-485)||(3490426-3490470)
chr1 (441-485)||(6427440-6427484)
chr1 (422-478)||(46348400-46348456)
chr1 (415-478)||(36878447-36878510)
chr1 (440-478)||(37598818-37598856)
chr1 (410-483)||(39101187-39101258)
chr1 (440-477)||(609493-609530)
chr1 (440-477)||(10572624-10572661)
chr1 (412-465)||(45660776-45660829)
chr1 (422-478)||(1815243-1815299)
chr1 (422-482)||(24577203-24577263)
chr1 (422-478)||(38503306-38503362)
chr1 (446-478)||(48040503-48040535)
[»] chr4 (17 HSPs)
chr4 (376-472)||(24343499-24343595)
chr4 (354-477)||(20743221-20743350)
chr4 (363-457)||(3144611-3144704)
chr4 (376-478)||(7012052-7012160)
chr4 (363-483)||(31243500-31243626)
chr4 (336-471)||(53381527-53381658)
chr4 (399-472)||(6273936-6274009)
chr4 (377-457)||(18513213-18513293)
chr4 (394-482)||(23386127-23386216)
chr4 (422-478)||(16303283-16303339)
chr4 (415-455)||(49659533-49659573)
chr4 (440-473)||(12895309-12895342)
chr4 (390-478)||(20521836-20521922)
chr4 (446-478)||(19482654-19482686)
chr4 (422-478)||(21945489-21945545)
chr4 (422-478)||(36635310-36635366)
chr4 (415-463)||(50848313-50848361)
[»] chr8 (21 HSPs)
chr8 (363-472)||(14513132-14513241)
chr8 (399-466)||(13845232-13845299)
chr8 (395-478)||(3658133-3658216)
chr8 (400-479)||(44067501-44067580)
chr8 (408-478)||(39820415-39820485)
chr8 (408-457)||(35431143-35431192)
chr8 (423-483)||(11815810-11815870)
chr8 (401-484)||(40063933-40064014)
chr8 (415-478)||(28883888-28883951)
chr8 (395-478)||(15816113-15816202)
chr8 (408-457)||(1676719-1676768)
chr8 (422-483)||(13844613-13844674)
chr8 (422-478)||(4673442-4673498)
chr8 (422-482)||(4786355-4786415)
chr8 (373-457)||(8017493-8017577)
chr8 (413-456)||(12559114-12559157)
chr8 (440-478)||(36450789-36450827)
chr8 (404-473)||(18130531-18130600)
chr8 (402-466)||(13009490-13009554)
chr8 (440-484)||(14227202-14227246)
chr8 (422-478)||(20873055-20873111)
[»] scaffold0007 (1 HSPs)
scaffold0007 (400-478)||(225263-225341)
[»] scaffold0598 (1 HSPs)
scaffold0598 (399-478)||(8047-8126)
[»] scaffold0306 (1 HSPs)
scaffold0306 (440-478)||(13386-13424)
[»] scaffold0152 (1 HSPs)
scaffold0152 (440-478)||(21903-21941)
[»] scaffold0199 (1 HSPs)
scaffold0199 (408-457)||(1956-2005)
[»] scaffold0019 (1 HSPs)
scaffold0019 (441-486)||(71701-71746)
[»] scaffold0122 (1 HSPs)
scaffold0122 (434-486)||(7988-8040)
[»] scaffold0778 (1 HSPs)
scaffold0778 (393-467)||(4403-4477)
[»] scaffold0036 (1 HSPs)
scaffold0036 (365-403)||(35677-35715)
[»] scaffold0018 (1 HSPs)
scaffold0018 (440-478)||(178854-178892)
[»] scaffold0103 (1 HSPs)
scaffold0103 (422-478)||(51797-51853)
[»] scaffold0053 (1 HSPs)
scaffold0053 (422-478)||(8784-8840)
[»] scaffold0049 (1 HSPs)
scaffold0049 (418-454)||(56932-56968)
[»] scaffold0022 (1 HSPs)
scaffold0022 (422-478)||(90829-90885)
[»] scaffold0004 (1 HSPs)
scaffold0004 (422-478)||(92793-92849)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 492
Target Start/End: Complemental strand, 37987217 - 37986751
Alignment:
Q  30 gtttggaacaacttggagaatatcttagctcatataaatccctttaaatcttttccaatttcaaacaattatgttagttcactcttaaactttttggaaa 129  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37987217 gtttggaacaacttggagaatatcttagctcgtataaatctctttaaatcttttccaatttcaaacaattatgttagttcactcttaaactttttggaaa 37987118  T
Q  130 gagtgctagatatatagattagatttgggacaagaaagattaaagaaaacaacttgttctaaaagaatataaaagagagagagatctcaactacccaagc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37987117 gagtgctagatatatagattagatttgggacaagaaagattaaagaaaacaacttgttctaaaagaatataaaagagagagagatctcaactactcaagc 37987018  T
Q  230 ataaaatgaggcattgccttgtattatatacagaaatagaaatgatacagctaattttttaatcttaacctttagataagnnnnnnnnnnnnnnnnnngt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||    
T  37987017 ataaaatgaggcattgccttgtattatatacagaaatagaaatgatacagctaattttttaatcttaacctttagataagtttttttatttttgttttgt 37986918  T
Q  330 tatctt----aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgatta 425  Q
    ||||||    |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37986917 tatcttaatcaacctatgaaacatgaatactcttcggattaggtttgtttccgtgtcagacactcgtcggtgtccgacaccaacacgatacctatgatta 37986818  T
Q  426 cactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgt 492  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  37986817 cactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgtcgtgtccgagtctgt 37986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 23354646 - 23354725
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| |||||| || |||| |||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtc 23354725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 486
Target Start/End: Complemental strand, 38919271 - 38919184
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccga 486  Q
    ||||||| ||||||| ||||||||||||||| || |||| ||||||||||||||||||| ||| |||| ||||  ||||| |||||||    
T  38919271 ccgacactaacacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggtgtgttcgtgtcatgtccga 38919184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 466
Target Start/End: Complemental strand, 25544544 - 25544479
Alignment:
Q  401 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 466  Q
    |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  |||||||    
T  25544544 gacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcgg 25544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 23354989 - 23355068
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| ||| || |||||||||| |||| || |||||||||||||||||||||||| |||||| || |||| |||||    
T  23354989 ccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtc 23355068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 457
Target Start/End: Complemental strand, 24011146 - 24011043
Alignment:
Q  354 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 453  Q
    |||||||| |||| |||||| | |||||| ||||| | || || || |||||| || ||| ||||||||||||||| || ||| ||||||||||||||||    
T  24011146 actcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaatta 24011047  T
Q  454 ttat 457  Q
    ||||    
T  24011046 ttat 24011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 10535757 - 10535823
Alignment:
Q  403 caccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgt 469  Q
    ||||||||||| || |||||||||||| || ||| ||||||||||||||||||||  ||||||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 485
Target Start/End: Complemental strand, 12748733 - 12748663
Alignment:
Q  415 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||||||||||||| || ||| ||||||||||||||||||||   |||| ||||||| ||||||||||||    
T  12748733 acctatgattacactgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtcgtgtccg 12748663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 12464882 - 12464922
Alignment:
Q  438 tcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  12464882 tcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 454
Target Start/End: Original strand, 11307963 - 11308053
Alignment:
Q  370 gtgtttcggtgtcagacactcgtcggtgtcc------gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattat 454  Q
    ||||||||||||| ||||| |||||||||||      |||||| |||||| ||||||||||||||| || ||| ||||||| |||||||||    
T  11307963 gtgtttcggtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 4207989 - 4207909
Alignment:
Q  336 aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacc 417  Q
    ||||||||||||||||| |||||||| ||||   |||||||||||||  ||||  ||| |||||||||||| ||||||||||    
T  4207989 aacctatgaaacatgaacactcttcggattaaacgtgtttcggtgtcgaacacgtgtc-gtgtccgacaccgacacgatacc 4207909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 472
Target Start/End: Complemental strand, 19574047 - 19573970
Alignment:
Q  395 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    |||||||||||| |||||  |||||| |||||||| || ||| | ||||||| ||||||||||  |||||||||||||    
T  19574047 gtgtccgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 38117194 - 38117239
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  38117194 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 38117239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 485
Target Start/End: Complemental strand, 26769529 - 26769490
Alignment:
Q  446 tcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  26769529 tcaaattattagttgtgtcggcgtgtctgtgtcgtgtccg 26769490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 485
Target Start/End: Original strand, 42205868 - 42205915
Alignment:
Q  438 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  42205868 tcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccg 42205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Complemental strand, 15972897 - 15972859
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  15972897 attttttcaaattattaattgtgtcggcgtgtcagtgtc 15972859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 10735251 - 10735202
Alignment:
Q  429 tcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| |||||||| |||||||||||| |||||| ||||||| ||||    
T  10735251 tcaaatatttcattttcccaaattattattggtgtcgtcgtgtcaatgtc 10735202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 475
Target Start/End: Original strand, 12668440 - 12668493
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagt 475  Q
    |||||||| || ||| ||||||| ||||||||||| || |||||||||||||||    
T  12668440 attacactgaattatgtcattttttcaaattattagttatgtcggcgtgtcagt 12668493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 12940952 - 12941008
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| ||||| ||||||||||| |||||||  ||||||||||||    
T  12940952 attacactgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtc 12941008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 18841030 - 18841086
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||| |||||||||||||    
T  18841030 attacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtc 18841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 20539691 - 20539747
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||| ||||||||||||    
T  20539691 attacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtc 20539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 470
Target Start/End: Complemental strand, 30335459 - 30335411
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtg 470  Q
    |||||||| || ||| ||||||| ||||||||||| |||||||||||||    
T  30335459 attacactaaattatgtcattttttcaaattattagttgtgtcggcgtg 30335411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 41849398 - 41849354
Alignment:
Q  361 gaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacac 405  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||    
T  41849398 gaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacac 41849354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 4017767 - 4017867
Alignment:
Q  378 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||||||||||  ||||||||||||| ||||    
T  4017767 gtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgt 4017866  T
Q  478 c 478  Q
    |    
T  4017867 c 4017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 384 - 472
Target Start/End: Original strand, 38804534 - 38804622
Alignment:
Q  384 gacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||  | ||| ||||||||| ||||||||||  |||||||||||||    
T  38804534 gacacacgtcggtgtccgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgtgtc 38804622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 466
Target Start/End: Original strand, 7133236 - 7133339
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 462  Q
    |||||||||||  | ||||| ||||| ||||||||||||||||| ||||   ||||||||||||||| || ||| ||||||||||||||||| || ||||    
T  7133236 attaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtg 7133335  T
Q  463 tcgg 466  Q
    ||||    
T  7133336 tcgg 7133339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 493
Target Start/End: Original strand, 29812658 - 29812750
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgtg 493  Q
    |||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  | ||||  ||||| |||||||||||| |||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcg--gtgtccgtgtcgtgtccgtgtctgtg 29812750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 23930307 - 23930204
Alignment:
Q  376 cggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagt 475  Q
    ||||||| ||||| | ||||| ||||||||| |||| | ||||||||||||||| || ||| |||||||||||||||| |||  ||||||  |||||| |    
T  23930307 cggtgtcggacacgcatcggtatccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcgatgtgtcaat 23930208  T
Q  476 gtcg 479  Q
    ||||    
T  23930207 gtcg 23930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 43250057 - 43249979
Alignment:
Q  400 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||| |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 43249979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 457
Target Start/End: Complemental strand, 5938573 - 5938479
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||||||||| ||||||| ||||| | |||||||| |||||| |||| | |||||| |||| ||| || ||| | ||||| ||||||||||||    
T  5938573 attaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatgttattttatcaaattattat 5938479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 23751956 - 23751907
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||    
T  23751956 acacgacacctatgattacactaaattatatcattttatcaaattattat 23751907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 30516373 - 30516430
Alignment:
Q  421 gattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||| | || |||||||||||||||||||||| || |||||| ||||||||||||    
T  30516373 gattacattgaattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtc 30516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 27945083 - 27945027
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||||||||||||||| | |||||||||||||||||||    
T  27945083 attacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtc 27945027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 10230062 - 10230125
Alignment:
Q  394 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||||||||||||||||| | ||||  ||||||| || ||| |||||| |||||||||||||    
T  10230062 ggtgtccgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattat 10230125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 472
Target Start/End: Original strand, 23128674 - 23128728
Alignment:
Q  418 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    |||||||||||| || |||||  |||||||||||||||||| ||||| |||||||    
T  23128674 tatgattacactgaattatatggttttctcaaattattattggtgtcagcgtgtc 23128728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 927870 - 927907
Alignment:
Q  438 tcattttctcaaattattatttgtgtcggcgtgtcagt 475  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  927870 tcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 22683758 - 22683807
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| |||||||||| |||| || |||||||| |||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattat 22683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 22868084 - 22868027
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcg 479  Q
    |||||||| || ||| | ||||||||| ||||||| | ||||||||||||||||||||    
T  22868084 attacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtcg 22868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Original strand, 29788689 - 29788729
Alignment:
Q  442 tttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  29788689 tttctcaaattattatt-gtgtcgacgtgtcagtgtcgtgtc 29788729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 6630949 - 6630985
Alignment:
Q  442 tttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||| | |||||||||||||||||||    
T  6630949 tttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 9408351 - 9408407
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||||| |||||||||||    
T  9408351 attacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtc 9408407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 15902864 - 15902808
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||||| |||||||| ||||||||||    
T  15902864 attacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtc 15902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 23191938 - 23191882
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| |||||| | |||||||||||||||||   |||||||||| ||||||||    
T  23191938 attacactgaaatatgtgattttctcaaattattagcggtgtcggcgtatcagtgtc 23191882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 32308162 - 32308106
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 457
Target Start/End: Complemental strand, 43554607 - 43554528
Alignment:
Q  378 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  43554607 gtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 478
Target Start/End: Original strand, 26205718 - 26205833
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 462  Q
    |||| ||||||  ||||||| || || ||| |||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||| | ||||  ||     
T  26205718 attacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaaattttatcggta 26205817  T
Q  463 tcggcgtgtcagtgtc 478  Q
    ||| ||||||||||||    
T  26205818 tcgacgtgtcagtgtc 26205833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 457
Target Start/End: Complemental strand, 25863297 - 25863211
Alignment:
Q  371 tgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||| ||||||||||||| | |||||| |||||||  |||||| || ||| |||||||| || ||||||||||||||||||||||||    
T  25863297 tgttccggtgtcagacacgcatcggtgcccgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 42469270 - 42469212
Alignment:
Q  415 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtca 473  Q
    ||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtca 42469212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 455
Target Start/End: Original strand, 39695989 - 39696049
Alignment:
Q  395 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattatt 455  Q
    ||||| |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||    
T  39695989 gtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 477
Target Start/End: Original strand, 14574029 - 14574121
Alignment:
Q  384 gacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    ||||| |||||| |||||||||  |||||| |||||| |||||||| || ||||||||||  ||||||||||| | ||||||||||||| ||||    
T  14574029 gacacgcgtcggcgtccgacactgacacga-acctataattacactgaattatatcatttcatcaaattattactcgtgtcggcgtgtcggtgt 14574121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 478
Target Start/End: Complemental strand, 21137788 - 21137675
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 462  Q
    |||||||||||  ||||||| ||||| ||| ||||||||||  | |||||| |||||||||| |||| || ||  ||||||||||| |||||||    ||    
T  21137788 attaggtgtgtcccggtgtcggacacgcgttggtgtccgac--cgacacgacacctatgatttcactgaattacgtcattttctcagattattaccgatg 21137691  T
Q  463 tcggcgtgtcagtgtc 478  Q
    ||||||||||||||||    
T  21137690 tcggcgtgtcagtgtc 21137675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 477
Target Start/End: Original strand, 7997169 - 7997238
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    |||||| || ||| ||||||||  | ||||||||||||||||||||||||  |||| |||||||||||||    
T  7997169 acacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgt 7997238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Complemental strand, 31084347 - 31084302
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  31084347 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 31084302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 31264494 - 31264437
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 465  Q
    |||||| || |||||||||||| || ||| ||||||||||||||||||| ||||||||    
T  31264494 acacgacacttatgattacactgaattatgtcattttctcaaattattacttgtgtcg 31264437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 477
Target Start/End: Original strand, 24906318 - 24906373
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    |||||||| || ||| ||||||| |||||||||||| ||||| |||||||||||||    
T  24906318 attacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 36642780 - 36642835
Alignment:
Q  423 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||| |||||| ||| ||| |||||||||||  ||||||||||||||||||||    
T  36642780 ttacactaaaatatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtc 36642835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Complemental strand, 9449493 - 9449455
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  9449493 attttctcaaattattattggtgtcggcgtgccagtgtc 9449455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 9878047 - 9878105
Alignment:
Q  420 tgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| |||| ||  |||| |||||||||||||||| |||||| ||||||||||||    
T  9878047 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 9878105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 2577193 - 2577241
Alignment:
Q  418 tatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 466  Q
    |||||||||||| || ||| ||||||||||||||||||||  |||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcgg 2577241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 14674311 - 14674255
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  14674311 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 14674255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 15410461 - 15410521
Alignment:
Q  418 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||||| ||  |||| ||||||| |||||||||   |||||||||||||||||||    
T  15410461 tatgattacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtc 15410521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 35252310 - 35252392
Alignment:
Q  401 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||||||||| || || |||||||||| | || ||| | |||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  35252310 gacaccaacatgacacatatgattacatt-aactatgtaattttctcaaat-attattggtgtcggcgtgtccgtgtcatgtccg 35252392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 41558716 - 41558756
Alignment:
Q  438 tcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  41558716 tcattttctcaaattattatttgtgtcaatgtgtcagtgtc 41558756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 339 - 472
Target Start/End: Complemental strand, 25074914 - 25074781
Alignment:
Q  339 ctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatat 438  Q
    ||||||| || ||| |||| ||| |||||||||||  | ||||| ||||| ||| |||||| |||||| |||| |  ||||||||||||||||| ||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  439 cattttctcaaattattatttgtgtcggcgtgtc 472  Q
    |||||||||||||||||||  |||||||||||||    
T  25074814 cattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 354 - 478
Target Start/End: Original strand, 25651980 - 25652104
Alignment:
Q  354 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 453  Q
    |||||||| ||||||||||| ||||||||  ||||  |||||||||| ||||  |||| | |||||| | |||||| || ||||||||||||||||||||    
T  25651980 actcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcattttctcaaatta 25652079  T
Q  454 ttatttgtgtcggcgtgtcagtgtc 478  Q
    ||||  |||| ||||||| ||||||    
T  25652080 ttatccgtgttggcgtgttagtgtc 25652104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 14223839 - 14223926
Alignment:
Q  391 gtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||| |||||| |||||| || ||||| |||||| || |||||| ||||||||||||||||| |||||||||||||| |||||    
T  14223839 gtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtc 14223926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 25892530 - 25892457
Alignment:
Q  394 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggc 467  Q
    ||||||||||||  |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| |||||    
T  25892530 ggtgtccgacactgacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcggc 25892457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 463
Target Start/End: Complemental strand, 27903718 - 27903633
Alignment:
Q  378 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgt 463  Q
    ||||||||||| ||||||| ||||||||| |||| | || |||||||||| | || |||||| ||||||||||||||||| |||||    
T  27903718 gtgtcagacacgcgtcggtatccgacaccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 41319303 - 41319400
Alignment:
Q  398 tccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgtgct 495  Q
    ||||||||| |||||| || ||  |||||| | || ||| ||||||| ||||||||||||| |||||| |||||| |||||||||| |||||||||||    
T  41319303 tccgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtctgagtctgtgct 41319400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 408 - 472
Target Start/End: Complemental strand, 15864889 - 15864825
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||  |||||||||||||    
T  15864889 acacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtc 15864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 485
Target Start/End: Complemental strand, 20503507 - 20503444
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||||||| || ||| ||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  20503507 attacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgtcgtgtccg 20503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 463
Target Start/End: Complemental strand, 25326505 - 25326427
Alignment:
Q  385 acactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgt 463  Q
    |||| |||||||||||||||||||||||| | |||| |||||||| || ||||| ||||| | |||||||||| |||||    
T  25326505 acacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 34189483 - 34189426
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 465  Q
    |||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcg 34189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 12704629 - 12704709
Alignment:
Q  377 ggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||  ||| ||||||||||||| |||||| ||||||||||||| | || ||| ||||||| ||||||||||||    
T  12704629 ggtgtcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 472
Target Start/End: Complemental strand, 8903501 - 8903424
Alignment:
Q  394 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    |||||||| || | |||||| |||||| |||||||| |||||| ||||||||||||| ||||||  |||||||||||||    
T  8903501 ggtgtccggcatcgacacgacacctataattacact-aaatatgtcattttctcaaaatattatccgtgtcggcgtgtc 8903424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 485
Target Start/End: Complemental strand, 10954996 - 10954930
Alignment:
Q  420 tgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtg-tcgtgtccg 485  Q
    |||||||||| || ||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  10954996 tgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgtccg 10954930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 24205044 - 24205114
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  24205044 acacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 24205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Complemental strand, 21479142 - 21479097
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  21479142 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 21479097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 34307770 - 34307831
Alignment:
Q  395 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattatta 456  Q
    |||||||||||| |||||| || ||| |||||||| |||||| | |||||||||||||||||    
T  34307770 gtgtccgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Complemental strand, 40052356 - 40052311
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  40052356 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 40052311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 14747584 - 14747540
Alignment:
Q  441 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||| |||||||||||  |||||||||||||||||||||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 14747540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 478
Target Start/End: Original strand, 10335304 - 10335359
Alignment:
Q  423 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||| |||||| | | ||| ||||||||||| |||||||||||||||||||||    
T  10335304 ttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtc 10335359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 485
Target Start/End: Complemental strand, 20691365 - 20691298
Alignment:
Q  418 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||||||||||| || ||| ||||||||||||||||||||  || ||  ||||||||||| |||||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgttgtgtccg 20691298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 457
Target Start/End: Complemental strand, 21211374 - 21211295
Alignment:
Q  378 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    ||||| ||||| ||||||||||  ||||| |||||| ||| || |||||||| || ||| | ||||||||||||||||||    
T  21211374 gtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgtaattttctcaaattattat 21211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Complemental strand, 26290395 - 26290352
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  26290395 attttctcaaattattaatggtgtcggcgtgtcagtgtcttgtc 26290352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 39756252 - 39756214
Alignment:
Q  448 aaattattatttgtgtcggcgtgtcagtgtcgtgtccga 486  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  39756252 aaattattaattttgtcggcgtgtcagtgtcgtgtccga 39756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 52369840 - 52369782
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||||| |||||| ||||||||||||| | || ||| | ||||||||||||||||||    
T  52369840 ccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 495
Target Start/End: Complemental strand, 1830397 - 1830312
Alignment:
Q  410 acgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgtgct 495  Q
    |||| ||||||||||||||| || ||| ||||||||| |||||||||   |||||||| ||||  |||| |||||| ||| |||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattattaaaagtgtcggcatgtccttgtcatgtccgtgtccgtgct 1830312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 3730168 - 3730217
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  3730168 acacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 8383299 - 8383243
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| |||||||||||||||||   |||||||||||||| ||||    
T  8383299 attacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtc 8383243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 10268503 - 10268559
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  10268503 attacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtc 10268559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 15796311 - 15796367
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||| ||||    
T  15796311 attacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtc 15796367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 16789668 - 16789712
Alignment:
Q  423 ttacactcaaatatatcattttctcaaattattatttgtgtcggc 467  Q
    ||||||| || ||| |||||||||||||||||||| |||||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcggc 16789712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 26665162 - 26665134
Alignment:
Q  438 tcattttctcaaattattatttgtgtcgg 466  Q
    |||||||||||||||||||||||||||||    
T  26665162 tcattttctcaaattattatttgtgtcgg 26665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 478
Target Start/End: Complemental strand, 29508514 - 29508430
Alignment:
Q  395 gtgtccgacaccaaca-cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||||||||| ||| || ||| |||||||| || ||||| ||||| ||||||||||| | || |||| |||||| ||||    
T  29508514 gtgtccgacaccaacatcgacacatataattacactgaattatatgattttttcaaattattagtggtatcggtgtgtcaatgtc 29508430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 55401117 - 55401061
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||| ||||||||    
T  55401117 attacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtc 55401061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 378 - 478
Target Start/End: Original strand, 17168436 - 17168536
Alignment:
Q  378 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    |||| ||||||  ||| |||||||||||| |||||| |||||| |||||||| || ||||||||||||||||||||||||  |||| |||||||||||||    
T  17168436 gtgttagacacgtgtcagtgtccgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgt 17168535  T
Q  478 c 478  Q
    |    
T  17168536 c 17168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 478
Target Start/End: Complemental strand, 26247526 - 26247412
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 462  Q
    |||||||||||| |||||||||||||  || ||||||||||||| |||||| ||||||||||| ||| |||||| ||||||||| ||||||||||  ||     
T  26247526 attaggtgtgtt-cggtgtcagacacgtgttggtgtccgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgta 26247428  T
Q  463 tcggcgtgtcagtgtc 478  Q
    || | |||||||||||    
T  26247427 tctgtgtgtcagtgtc 26247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 34446666 - 34446545
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 462  Q
    |||||||||||  | |||||||| || |||||||||  |||||| |||||| ||||||||||||||| || ||| ||||||||||||||||||||  |||    
T  34446666 attaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtg 34446567  T
Q  463 tcggcgtgtcagtgtcgtgtcc 484  Q
    || | ||||| ||||| |||||    
T  34446566 tcagagtgtctgtgtcatgtcc 34446545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 6389805 - 6389729
Alignment:
Q  402 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  |||||||||||| ||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtc 6389729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 19602177 - 19602261
Alignment:
Q  401 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| || ||||| |||| |||||||    
T  19602177 gacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtccg 19602261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 2153884 - 2153960
Alignment:
Q  402 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| ||| |||||| |||||||| || ||||||||||||| |||||||| || ||||||||||||| |||||    
T  2153884 acaccaacgcgacacctataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtc 2153960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 4937618 - 4937573
Alignment:
Q  438 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  4937618 tcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtc 4937573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 4953327 - 4953282
Alignment:
Q  438 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  4953327 tcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtc 4953282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 13689196 - 13689254
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 466  Q
    |||||||||||||||||||| | |||| | | |||||||||||||||||| ||||||||    
T  13689196 acacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcgg 13689254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 12868710 - 12868755
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  12868710 attttttcaaattattaactgtgtcggcgtgtcagtgtcgtgtccg 12868755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 5732527 - 5732583
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| |||||| | |||||||||||||||||   |||||||||||||||||||    
T  5732527 attacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtc 5732583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 7938158 - 7938102
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  7938158 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 7938102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 16833350 - 16833294
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||||||||||||    
T  16833350 attacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 16833294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 3398671 - 3398605
Alignment:
Q  411 cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||| ||| |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  3398671 cgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtc 3398605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 7625175 - 7625108
Alignment:
Q  411 cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||| ||||| |||| ||| || ||||||||||||||||||||||||  |||||| |||||| |||||    
T  7625175 cgattcctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtc 7625108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 9024189 - 9024248
Alignment:
Q  418 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    |||||||||| | || ||| ||||||||||||||||| |||||||||| |||||| ||||    
T  9024189 tatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 451
Target Start/End: Original strand, 4420156 - 4420225
Alignment:
Q  377 ggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaat 451  Q
    |||||||||||| ||| |||||| |||||||||||     ||||| ||||||| || ||||||||||||||||||    
T  4420156 ggtgtcagacacacgttggtgtctgacaccaacac-----ctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 6299567 - 6299505
Alignment:
Q  409 cacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 471  Q
    ||||| |||||| |||||| | || ||||||||||||||||||||||||   |||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6299505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 6306377 - 6306315
Alignment:
Q  409 cacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 471  Q
    ||||| |||||| |||||| | || ||||||||||||||||||||||||   |||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6306315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 8777008 - 8777046
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  8777008 attttttcaaattattagttgtgtcggcgtgtcagtgtc 8777046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 478
Target Start/End: Original strand, 10760868 - 10760914
Alignment:
Q  432 aatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10760868 aatatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 485
Target Start/End: Original strand, 5626731 - 5626776
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||||| |||  |||| ||||||||||||||||||||||||||||    
T  5626731 attttctaaaaaaattagttgtgtcggcgtgtcagtgtcgtgtccg 5626776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 12235522 - 12235571
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||||||||||||| || ||| |||||||||| |||||||||    
T  12235522 acacgacacctatgattacactgaattatgtcattttctctaattattat 12235571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 17422274 - 17422327
Alignment:
Q  424 tacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    |||| |||| ||||||||||||||||||||||||  |||||| ||||| |||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 478
Target Start/End: Complemental strand, 677867 - 677823
Alignment:
Q  434 tatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| |||||||||||||||||   |||||||||||||||||||    
T  677867 tatatgattttctcaaattattaacagtgtcggcgtgtcagtgtc 677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 7996395 - 7996451
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| |||||||||||||||||   |||||||| ||||||||||    
T  7996395 attacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 7996451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 8022406 - 8022350
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| |||||||||||||||||   |||||||| ||||||||||    
T  8022406 attacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 8022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 8365560 - 8365592
Alignment:
Q  446 tcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||| |||||||||||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtc 8365592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 10770691 - 10770747
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||| |||||| ||||||||||||||    
T  10770691 attacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtc 10770747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 12696366 - 12696310
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  12696366 attacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtc 12696310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 16766739 - 16766683
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  16766739 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 16766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 17841606 - 17841662
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  17841606 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 17841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 476
Target Start/End: Complemental strand, 32313428 - 32313392
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtg 476  Q
    |||||||||| |||||||| |||||||||||||||||    
T  32313428 attttctcaacttattattggtgtcggcgtgtcagtg 32313392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 34595176 - 34595120
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||||||| ||||    
T  34595176 attacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtc 34595120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 457
Target Start/End: Original strand, 42004897 - 42004999
Alignment:
Q  354 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 453  Q
    ||||||||||||||| |||||| | |||| ||||  ||||||||||||||||| |||| | ||||||||||||||| || ||| ||||||||||||||||    
T  42004897 actcttcgaattaggcgtgtttag-tgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaatta 42004995  T
Q  454 ttat 457  Q
    ||||    
T  42004996 ttat 42004999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 457
Target Start/End: Original strand, 6936385 - 6936452
Alignment:
Q  390 cgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    ||||||||||||||||  |||||| ||||||||||||||| || ||| ||||||||||| ||||||||    
T  6936385 cgtcggtgtccgacacagacacgacacctatgattacacttaattatgtcattttctcagattattat 6936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 485
Target Start/End: Original strand, 22881633 - 22881696
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  22881633 attacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccg 22881696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 338 - 456
Target Start/End: Original strand, 20157283 - 20157401
Alignment:
Q  338 cctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatata 437  Q
    |||||||| || | |||||| || |||||||||||| |||||||| ||||| |||||||||| ||||| |   ||| || |||||||||||| || |||     
T  20157283 cctatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatg 20157382  T
Q  438 tcattttctcaaattatta 456  Q
    | ||||||||| |||||||    
T  20157383 tgattttctcacattatta 20157401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 40747760 - 40747834
Alignment:
Q  392 tcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 466  Q
    ||||||||||||||||||| || |||||| |||||| | || ||| ||||||||||||||||||||  |||||||    
T  40747760 tcggtgtccgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcgg 40747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 485
Target Start/End: Original strand, 17831486 - 17831611
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgat---acctatgattacactcaaatatatcattttctcaaattattattt 459  Q
    |||||| ||||  ||||||| |||||  |||||||||||||||  ||||||    || |||||||||||| ||  || | |||||||||||||||||       
T  17831486 attaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgacacgacgacacatatgattacactgaataatgtgattttctcaaattattagcg 17831585  T
Q  460 gtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||||||||||||||||||| ||||    
T  17831586 gtgtcggcgtgtcagtgtcgtatccg 17831611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 3490426 - 3490470
Alignment:
Q  441 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    ||||||||||||||||   ||||||||||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccg 3490470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 6427484 - 6427440
Alignment:
Q  441 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 485  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  6427484 ttttttcaaattattagttgtgtcggcatgtcagtgtcgtgtccg 6427440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 46348400 - 46348456
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  46348400 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 46348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 36878510 - 36878447
Alignment:
Q  415 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||| |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  36878510 acctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Complemental strand, 37598856 - 37598818
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  37598856 attttttcaaattattagttgtgtcggcgtgtcagtgtc 37598818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 483
Target Start/End: Original strand, 39101187 - 39101258
Alignment:
Q  410 acgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    |||| |||||| |||||||| || ||| | |||||||||||||||||| |||||||  ||||| ||||||||||    
T  39101187 acgacacctataattacacttaattatgttattttctcaaattattatatgtgtcg--gtgtctgtgtcgtgtc 39101258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 609493 - 609530
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagtgt 609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 10572624 - 10572661
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgt 477  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  10572624 attttctcaaattattagtggtgtcggcgtgtcagtgt 10572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 45660776 - 45660829
Alignment:
Q  412 gatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 465  Q
    |||||||||||||||| |||| |||  ||| |||||||||||||||| ||||||    
T  45660776 gatacctatgattacattcaattatgacatattctcaaattattattggtgtcg 45660829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 1815299 - 1815243
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| | |||| ||||||||||||||||||||||||||    
T  1815299 attacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtc 1815243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 24577203 - 24577263
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 482  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||| ||||||| |||||||||    
T  24577203 attacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtcgtgt 24577263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 38503362 - 38503306
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| |||||||| |||||||||||||||||   ||||||| |||| ||||||    
T  38503362 attacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtc 38503306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 48040503 - 48040535
Alignment:
Q  446 tcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||||| ||||||||||||||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtc 48040535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 376 - 472
Target Start/End: Complemental strand, 24343595 - 24343499
Alignment:
Q  376 cggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    ||||||| ||||| |||||||||| |||||| |||||| |||||| |||||||| || ||| | ||||||||||||||||||  |||||||||||||    
T  24343595 cggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtc 24343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 477
Target Start/End: Original strand, 20743221 - 20743350
Alignment:
Q  354 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtc------cgacaccaacacgatacctatgattacactcaaatatatcattttctc 447  Q
    |||| ||| ||||| |||||| ||||||| |||||  |||||||||      ||||||| |||| | ||||||||||||||| || ||| ||||||||||    
T  20743221 actcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtcattttctc 20743320  T
Q  448 aaattattatttgtgtcggcgtgtcagtgt 477  Q
    ||||||||||  ||||||||||||||||||    
T  20743321 aaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 457
Target Start/End: Original strand, 3144611 - 3144704
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    ||||||||||| ||| |||  ||||| ||| |||||| |||||| |||||| ||||||||||||||| || ||||||||||||| ||||||||||    
T  3144611 attaggtgtgtctcg-tgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatcattttctgaaattattat 3144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 7012160 - 7012052
Alignment:
Q  376 cggtgtcagacactcgtcggtgtccgacaccaacac------gatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgt 469  Q
    ||||||| || || ||||||||||||||||| ||||      |||||||||||| ||||| || ||| ||||||||||||||||||||  ||||||||||    
T  7012160 cggtgtcggatacgcgtcggtgtccgacaccgacacaacaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgt 7012061  T
Q  470 gtcagtgtc 478  Q
    ||| |||||    
T  7012060 gtcggtgtc 7012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 483
Target Start/End: Original strand, 31243500 - 31243626
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacac------gatacctatgattacactcaaatatatcattttctcaaattatta 456  Q
    |||||||||||   ||||||  |||| | ||||||||||||||||||||      || ||||||||||||||| || ||| |||||||||||||||||||    
T  31243500 attaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattatta 31243599  T
Q  457 tttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    |  ||||||  ||| | ||||||||||    
T  31243600 taagtgtcgatgtgcctgtgtcgtgtc 31243626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 471
Target Start/End: Original strand, 53381527 - 53381658
Alignment:
Q  336 aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaata 435  Q
    |||||||||| || | | |||| ||| |||||||||||  ||||||| || || |||| |||||||||||| ||||||  ||||| |||||||| ||       
T  53381527 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataattacactgaa--- 53381623  T
Q  436 tatcattttctcaaattattatttgtgtcggcgtgt 471  Q
      ||||||||| ||||||||||  ||||||||||||    
T  53381624 -ttcattttcttaaattattatcggtgtcggcgtgt 53381658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 472
Target Start/End: Complemental strand, 6274009 - 6273936
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 472  Q
    |||||||| ||||||   |||| |||||||| || |||||||||||||||||||||| | |||||| |||||||    
T  6274009 ccgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtcagcgtgtc 6273936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 457
Target Start/End: Original strand, 18513213 - 18513293
Alignment:
Q  377 ggtgtcagacactcgtcggtgtccgacaccaacac-gatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||| |||||||||||||||| ||||| || || |||||||||| | || ||| ||||||||||||||||||||    
T  18513213 ggtgtcggacacacgtcggtgtccgacac-aacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 482
Target Start/End: Complemental strand, 23386216 - 23386127
Alignment:
Q  394 ggtgtccgacaccaacacgatacctatgattacactcaaatatatca-ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 482  Q
    ||||||||||||| ||| || ||||||||||||||| || ||||||| |||| | ||||||| ||  || |||||| |||||||||||||    
T  23386216 ggtgtccgacaccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgtatcggcgagtcagtgtcgtgt 23386127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 16303283 - 16303339
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||||||||| ||||| |||||| | ||||||||||||||||||    
T  16303283 attacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtc 16303339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  415 acctatgattacactcaaatatatcattttctcaaattatt 455  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Original strand, 12895309 - 12895342
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtca 473  Q
    ||||| ||||||||||||||||||||||||||||    
T  12895309 attttttcaaattattatttgtgtcggcgtgtca 12895342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 20521836 - 20521922
Alignment:
Q  390 cgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||||| |||||| ||  |||||| || | || ||| | ||||| ||||||||||||  || ||||||||||||||||    
T  20521836 cgtcggtgtccgacaccgacacgacac--atgatttcattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Complemental strand, 19482686 - 19482654
Alignment:
Q  446 tcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||| |||||||||||||||||||||    
T  19482686 tcaaattattagttgtgtcggcgtgtcagtgtc 19482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 21945545 - 21945489
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| ||||||| |||||||||||  ||||||||| ||||||||||    
T  21945545 attacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtc 21945489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 36635366 - 36635310
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||||||||||||||| | |||| ||||||||||||||    
T  36635366 attacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtc 36635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 50848313 - 50848361
Alignment:
Q  415 acctatgattacactcaaatatatcattttctcaaattattatttgtgt 463  Q
    ||||| ||||||||| || ||||||||||| ||||||||||||| ||||    
T  50848313 acctacgattacactgaattatatcattttttcaaattattattggtgt 50848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 472
Target Start/End: Original strand, 14513132 - 14513241
Alignment:
Q  363 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 462  Q
    |||||||||||| ||||||| ||||  |||||||||| |||||| |||| | | |||||||||| || || ||| | |||||||||||||||||||| ||    
T  14513132 attaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattatttttg 14513231  T
Q  463 tcggcgtgtc 472  Q
    | ||||||||    
T  14513232 ttggcgtgtc 14513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 13845299 - 13845232
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 466  Q
    |||||||  |||||| |||||||||||| || || |||||||||||||||||||||||||||||||||    
T  13845299 ccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcgg 13845232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 478
Target Start/End: Complemental strand, 3658216 - 3658133
Alignment:
Q  395 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||| |||||||| ||||||||||||||| || || || ||||||||||||||||||  ||||||  ||||| |||||    
T  3658216 gtgtccgacatcaacacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 479
Target Start/End: Complemental strand, 44067580 - 44067501
Alignment:
Q  400 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcg 479  Q
    ||||||| |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  ||||||||||||||||||||    
T  44067580 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcg 44067501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 39820485 - 39820415
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||||||  | ||| ||||||| |||||    
T  39820485 acacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtc 39820415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 35431143 - 35431192
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  35431143 acacgacacctatgattacactaaaatatgtcattttctcaaattattat 35431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 11815870 - 11815810
Alignment:
Q  423 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    ||||| |||| |||| |||||||||||||||||||| |||||  |||||||||||||||||    
T  11815870 ttacattcaattataacattttctcaaattattattggtgtcaacgtgtcagtgtcgtgtc 11815810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 40064014 - 40063933
Alignment:
Q  401 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtcc 484  Q
    |||||| ||||||  |||||||||||| | || ||| ||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcg--gtgtccgtgtcgtgtcc 40063933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 478
Target Start/End: Original strand, 28883888 - 28883951
Alignment:
Q  415 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||| |||| || ||| ||||||||||||||||||||| ||| |||| ||||||||||    
T  28883888 acctatgattccactgaattatgtcattttctcaaattattattcgtggcggcatgtcagtgtc 28883951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 478
Target Start/End: Original strand, 15816113 - 15816202
Alignment:
Q  395 gtgtccgacaccaacacgatacc------tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||||||| |||      ||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||||||||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 15816202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 1676768 - 1676719
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  1676768 acacgacacctatgattacactaaaatatgtcattttcacaaattattat 1676719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 13844613 - 13844674
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 483  Q
    ||||||||||| ||| | |||||||||||||||||   ||||||||||||| ||||||||||    
T  13844613 attacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 4673442 - 4673498
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || | ||| ||||| |||||||||||| ||||||||||||||||||||    
T  4673442 attacactgaattttatgattttttcaaattattatctgtgtcggcgtgtcagtgtc 4673498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 4786355 - 4786415
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 482  Q
    |||||||| || ||| | ||||||| ||||||||| | |||||||||||||||||||||||    
T  4786355 attacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtcgtgt 4786415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 457
Target Start/End: Complemental strand, 8017577 - 8017493
Alignment:
Q  373 tttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    ||||||||||||| |   |||||||||| ||||  |||||| | |||||||||||||||| ||| ||||||| ||| ||||||||    
T  8017577 tttcggtgtcagataggtgtcggtgtccaacactgacacgacatctatgattacactcaattatgtcattttttcatattattat 8017493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 456
Target Start/End: Original strand, 12559114 - 12559157
Alignment:
Q  413 atacctatgattacactcaaatatatcattttctcaaattatta 456  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  12559114 atacatatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 36450789 - 36450827
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  36450789 attttttcaaattattagttgtgtcggcgtgtcagtgtc 36450827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 18130531 - 18130600
Alignment:
Q  404 accaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtca 473  Q
    ||||||| || |||| || ||||||| || | |||||||||||||| ||||||| |||||||| ||||||    
T  18130531 accaacatgacacctctggttacacttaattgtatcattttctcaacttattatctgtgtcggtgtgtca 18130600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 13009490 - 13009554
Alignment:
Q  402 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 466  Q
    ||||| |||||| || |||||||||||| || |||||  |||||||||||||||||  |||||||    
T  13009490 acaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcgg 13009554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 484
Target Start/End: Complemental strand, 14227246 - 14227202
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtcc 484  Q
    ||||||||||||||||||| |||| | |||||||||| |||||||    
T  14227246 attttctcaaattattattggtgttgacgtgtcagtgacgtgtcc 14227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 20873111 - 20873055
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||| | ||||||||||||||||||    
T  20873111 attacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtc 20873055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 478
Target Start/End: Original strand, 225263 - 225341
Alignment:
Q  400 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||||||||| || ||| |||||| |  | ||| |||||||||||||||||||| ||||||||||||||||||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 8047 - 8126
Alignment:
Q  399 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||| ||| |||||||||||||| ||||||| || ||| ||||||||||||||||||||  || ||| |||||| |||||    
T  8047 ccgaaaccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtc 8126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 478
Target Start/End: Complemental strand, 13424 - 13386
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13424 attttctcaaattattagttgtgtcggcgtgtcagtgtc 13386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 21903 - 21941
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21903 attttctcaaattattagttgtgtcggcgtgtcagtgtc 21941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 2005 - 1956
Alignment:
Q  408 acacgatacctatgattacactcaaatatatcattttctcaaattattat 457  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  2005 acacgacacctatgattacactaaaatatgtcattttcacaaattattat 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 71746 - 71701
Alignment:
Q  441 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccga 486  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccga 71701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 8040 - 7988
Alignment:
Q  434 tatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccga 486  Q
    ||||| ||||| ||||||||||| ||||||||||||||| || ||||||||||    
T  8040 tatatgattttttcaaattattagttgtgtcggcgtgtctgtatcgtgtccga 7988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 4477 - 4403
Alignment:
Q  393 cggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggc 467  Q
    ||||||||||||| | ||||| | ||||||| ||||| || |||||||| |||| |||||||||| ||| |||||    
T  4477 cggtgtccgacactagcacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcggc 4403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 35715 - 35677
Alignment:
Q  365 taggtgtgtttcggtgtcagacactcgtcggtgtccgac 403  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  35715 taggtgtgtttcggtgtcagacacgcgttggtgtccgac 35677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 178854 - 178892
Alignment:
Q  440 attttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  178854 attttttcaaattattagttgtgtcggcgtgtcagtgtc 178892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 51853 - 51797
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  51853 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 51797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 8840 - 8784
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| ||  |||| ||||| |||||||||||  ||||||||||||||||||||    
T  8840 attacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 8784  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 56968 - 56932
Alignment:
Q  418 tatgattacactcaaatatatcattttctcaaattat 454  Q
    |||||||||||| || |||||||||||||||||||||    
T  56968 tatgattacactgaattatatcattttctcaaattat 56932  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 90885 - 90829
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||||| ||||||||||||||||| | |||| || |||||||||||    
T  90885 attacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtc 90829  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 92849 - 92793
Alignment:
Q  422 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 478  Q
    |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  92849 attacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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