View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_high_13 (Length: 499)
Name: NF0831_high_13
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 46169589 - 46169833
Alignment:
| Q |
30 |
ttaataaaagagaagaagttaattcagtcctaaaacattggcatggttattgagaatgaccaaatgacatgttgatatgtttcttaaagaccattttaac |
129 |
Q |
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| T |
46169589 |
ttaataaaagagaagaagttaattcagtcctaaaacactggcatggctattgagaatgaccaaatgacatgttgatatgtttcttaaagaccattttaac |
46169688 |
T |
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| Q |
130 |
agaaaaaacaacaccccttcatgatctttcaaaatctaaattt--atgttggccttgattgtgagttgtggctatgatctatttgagctgatgttgattg |
227 |
Q |
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| T |
46169689 |
agaaaaaacaacaccccttcatgatctttcaaaatctaaattttaatgttggccttgattgtgagttgtggctatgatctatttgagctgatgttgattg |
46169788 |
T |
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| Q |
228 |
ctaataacagaacattgagtgtttattatttaaatcactacaata |
272 |
Q |
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| T |
46169789 |
ctaataacagaacattgagtgtttattatttaaatcactacaata |
46169833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 345 - 474
Target Start/End: Original strand, 46169906 - 46170038
Alignment:
| Q |
345 |
ctctacattttaaacatc---atctctcttattttaaccaaactctgtctaaagtcactctataattcatacctaaaaggtagatgatcaaattttgaac |
441 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46169906 |
ctctacattttaaacatcatcatctctcttattttaaccaaattttgtctaaagtcactctataattcatacctaaaaggtagatgatcaaattttgaac |
46170005 |
T |
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| Q |
442 |
atggacaaggatactgtaactataattcatctc |
474 |
Q |
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| T |
46170006 |
atggacaaggatactgtaactataattcatctc |
46170038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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