View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_high_14 (Length: 498)
Name: NF0831_high_14
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 33127812 - 33127539
Alignment:
| Q |
11 |
cagagatgtgacctagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
110 |
Q |
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| T |
33127812 |
cagagatgtgaccaagagaataaaccaagatcataactgacaaaccccatgttacacaaattccaggaaatgttactgttcctttagtttcttccacttt |
33127713 |
T |
|
| Q |
111 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127712 |
attcagaacaactacgcaacaccctgcaaatattaagaagtatgttcctatcacctctgctattacctgttccatacatttaatttttaaataaaacatt |
33127613 |
T |
|
| Q |
211 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatattattaat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127612 |
cattagtagtgacaaagatattcaattcacaatactcaacacaataacatcaatgaaaactatatattattaat |
33127539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 276 - 430
Target Start/End: Complemental strand, 33127509 - 33127355
Alignment:
| Q |
276 |
attattaatatgtgtaccttttgtatgatttgaactacctcaggagaaccgcaaaaccctgattctcctttcgtttgtgtcttaagatcaccttcttcca |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33127509 |
attattaatatgtgtaccttttgtatgatttgaactacctcaggagaaccgcaaaaccctgattctccttttgtttgtgtcttaagatcaccttcttcca |
33127410 |
T |
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| Q |
376 |
ttttcgtgatctcacttgtagacatgttaacctaaattaaataattaaattgaac |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127409 |
ttttcgtgatctcacttgtagacatgttaacctaaattaaataattaaattgaac |
33127355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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