View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_15 (Length: 489)

Name: NF0831_high_15
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_15
NF0831_high_15
[»] chr8 (6 HSPs)
chr8 (29-468)||(1409035-1409474)
chr8 (180-319)||(5981452-5981593)
chr8 (252-319)||(2954309-2954376)
chr8 (193-334)||(2954531-2954675)
chr8 (180-291)||(5981744-5981856)
chr8 (252-307)||(3670883-3670938)
[»] chr4 (7 HSPs)
chr4 (204-283)||(4469193-4469272)
chr4 (252-319)||(10396423-10396490)
chr4 (148-307)||(11307268-11307429)
chr4 (252-319)||(11197233-11197300)
chr4 (204-307)||(11307613-11307718)
chr4 (204-244)||(16559370-16559410)
chr4 (42-86)||(30551590-30551634)
[»] chr3 (7 HSPs)
chr3 (252-319)||(43481595-43481662)
chr3 (252-298)||(53595988-53596034)
chr3 (252-298)||(53596303-53596349)
chr3 (252-319)||(40195904-40195971)
chr3 (275-334)||(53981528-53981586)
chr3 (204-319)||(43978609-43978726)
chr3 (252-296)||(16143468-16143512)
[»] chr2 (6 HSPs)
chr2 (205-301)||(19548169-19548267)
chr2 (252-301)||(28226362-28226411)
chr2 (260-301)||(19547894-19547935)
chr2 (252-301)||(40053187-40053236)
chr2 (252-301)||(40053479-40053528)
chr2 (186-283)||(10066574-10066673)
[»] chr1 (4 HSPs)
chr1 (205-334)||(43834486-43834618)
chr1 (252-319)||(15327863-15327930)
chr1 (205-243)||(5822175-5822213)
chr1 (210-319)||(4392232-4392343)
[»] chr7 (4 HSPs)
chr7 (207-334)||(22561945-22562075)
chr7 (252-319)||(23578088-23578155)
chr7 (184-319)||(2463164-2463300)
chr7 (231-334)||(7631266-7631373)
[»] chr6 (3 HSPs)
chr6 (180-301)||(7301593-7301717)
chr6 (252-319)||(7301384-7301451)
chr6 (252-301)||(15092084-15092133)
[»] scaffold0548 (1 HSPs)
scaffold0548 (204-307)||(4102-4208)
[»] scaffold0039 (1 HSPs)
scaffold0039 (210-301)||(29046-29141)
[»] chr5 (2 HSPs)
chr5 (34-82)||(13097462-13097510)
chr5 (269-301)||(26420849-26420881)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 29 - 468
Target Start/End: Complemental strand, 1409474 - 1409035
Alignment:
Q  29 aaaacctaacttgtaactactttaaacaatgttaaaataattctaacaaatctcaaaccaactctaaccgagtgaagtgataaataggttgatggttcaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1409474 aaaacctaacttgtaactactttaaacaatgttaaaataattctaacaaatctcaaaccatctctaaccgagtgaagtgataaataggttgatggttcaa 1409375  T
Q  129 ttttcaatggaaatgaaagtgttggggagttcagggaacgctgggagaggtaatgggctaaatatccaggatcactaagagacttagacatcacattttc 228  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  1409374 ttttcaatggaaatgaaagtgttggggagttcagggaacgtcgggagaggtaatgggttaaatatccaggatcactaagaaacttagacaccacattttc 1409275  T
Q  229 atccaaaatcttaagacattagctatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactcaacttaaaac 328  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1409274 atccaaaatcttaagaaattagctatggatcccctcccttatatatccaacattttctctatttctagtcgatctgagaattaatcactcaacttaaaac 1409175  T
Q  329 ccaacagaaagaaatatgcaacataaacttatttcagcttcatgaaatttgaatgtttggaattgattaaagagaaagacctatagtagttactcataca 428  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||     
T  1409174 ccaacagaaagaaatatgcgacataaacttatttcagcttcatgaaatttgaatgtttggatttgattagagagagagacctatagtagttactcatact 1409075  T
Q  429 ctaacttgaggtatcatatcaattcttcactgccactacc 468  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1409074 ctaacttgaggtatcatatcaattcttcactgccactacc 1409035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 319
Target Start/End: Original strand, 5981452 - 5981593
Alignment:
Q  180 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattagcta--tgggtcccctcccttatatatcca 277  Q
    |||||||||||  ||||| | || ||||||||||||||| ||||||| || |||||| |||||| ||| || ||  ||||||||||| ||||||||||||    
T  5981452 aatgggctaaacgtccagaaccaataagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcca 5981551  T
Q  278 acattttctccatttctagtcgatctgagaattaatcactca 319  Q
    || ||||||||||| ||||||||| || ||  ||||||||||    
T  5981552 acgttttctccattcctagtcgatgtgggacataatcactca 5981593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 2954309 - 2954376
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  2954309 tatgggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactca 2954376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 2954531 - 2954675
Alignment:
Q  193 tccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattagc--tatgggtcccctcccttatatatccaacattttctccat 290  Q
    ||||||| || ||||||||||||||  ||||| | || | |||| |||||| ||| ||   ||||||||  ||| |||||||||||||||||||||||||    
T  2954531 tccaggaccaataagagacttagacgccacatctccaccgaaaaccttaaggcatcaggcatatgggtcttctctcttatatatccaacattttctccat 2954630  T
Q  291 ttctagtcgatctgagaattaatcactca-acttaaaacccaaca 334  Q
    | |||||| || || ||  |||||||||| |||| ||||||||||    
T  2954631 tcctagtctatgtgggacataatcactcacacttgaaacccaaca 2954675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 5981744 - 5981856
Alignment:
Q  180 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattagct-atgggtcccctcccttatatatccaa 278  Q
    |||||||||||  || |||| || ||||||||||||||| ||||| | || |||||| |||||| || | | | |||||||||||| |||||||||||||    
T  5981744 aatgggctaaacttcaaggaccagtaagagacttagacaccacatctccacccaaaaccttaaggcaatggtttatgggtcccctctcttatatatccaa 5981843  T
Q  279 cattttctccatt 291  Q
    | ||| |||||||    
T  5981844 cgtttcctccatt 5981856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 3670883 - 3670938
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgaga 307  Q
    |||||||| | || |||||||||||||| ||| ||||||||||||||||| |||||    
T  3670883 tatgggtctcatctcttatatatccaacgtttcctccatttctagtcgatgtgaga 3670938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 4469272 - 4469193
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaagacattagctatgggtcccctcccttatatatccaacattt 283  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||   || |||||||| ||||||||| ||||||||    
T  4469272 taagagactcagacatcacattttcacccaaaaccttaagacattagacgtgtgtcccctctcttatatatacaacattt 4469193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 10396490 - 10396423
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    |||||||| |||| |||||||||||||||||| |||||||||||||| || |||||  ||||||||||    
T  10396490 tatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatgagacataatcactca 10396423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 11307268 - 11307429
Alignment:
Q  148 tgttggggagttcagggaacgctgggagaggtaatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacat 247  Q
    |||||||||||  ||||| | ||||||| |  |||  ||||||| | ||||| |||||||||||||||||| ||||| | || ||||||  ||||| |||    
T  11307268 tgttggggagtctagggagcactgggagcgacaataagctaaatgttcaggaccactaagagacttagacaccacatctccacccaaaacattaaggcat 11307367  T
Q  248 tagctat--gggtcccctcccttatatatccaacattttctccatttctagtcgatctgaga 307  Q
     || |||  | |||||||| |||||||||||||  ||| ||||||||||||| ||| |||||    
T  11307368 caggtatacgtgtcccctctcttatatatccaaggtttcctccatttctagttgatgtgaga 11307429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 11197300 - 11197233
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    |||||||| |||| |||||||||||||| ||| ||||||||||||||||| ||||   ||||||||||    
T  11197300 tatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataatcactca 11197233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 11307613 - 11307718
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    ||||| ||||||||| ||||| | || ||||||  ||||||||| || |||  | |||||||| || ||||||||||||||| |||||||| ||||||||    
T  11307613 taagacacttagacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacatttcctccatttatagtcgat 11307712  T
Q  302 ctgaga 307  Q
     |||||    
T  11307713 gtgaga 11307718  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 16559410 - 16559370
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaaga 244  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  16559410 taagagacttagacaccacatctccatccaaaatcttaaga 16559370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 30551590 - 30551634
Alignment:
Q  42 taactactttaaacaatgttaaaataattctaacaaatctcaaac 86  Q
    ||||||| ||||||||| || |||||||| |||||||||||||||    
T  30551590 taactaccttaaacaatattcaaataattttaacaaatctcaaac 30551634  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 43481662 - 43481595
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||  ||||||||||    
T  43481662 tatgggtcccctctcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactca 43481595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 53596034 - 53595988
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtc 298  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||    
T  53596034 tatgggtctcctctcttatatatccaacattttctctatttctagtc 53595988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 53596349 - 53596303
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtc 298  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||    
T  53596349 tatgggtctcctctcttatatatccaacattttctctatttctagtc 53596303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 40195904 - 40195971
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    |||||||| |||| |||||||||||||| ||| ||||||| ||||||||| ||| |  ||||||||||    
T  40195904 tatgggtctcctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactca 40195971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 53981586 - 53981528
Alignment:
Q  275 ccaacattttctccatttctagtcgatctgagaattaatcactcaacttaaaacccaaca 334  Q
    ||||||||| ||||||||||||||||| || || |||||||||| |||| ||||||||||    
T  53981586 ccaacatttcctccatttctagtcgatgtgggacttaatcactc-acttgaaacccaaca 53981528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 43978609 - 43978726
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    ||||||||||||| ||||||| | || |||||| |||||| || ||| |||  | ||| |||| |||||||||||||  ||| ||||||| |||||||||    
T  43978609 taagagacttagatatcacatctccacccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgat 43978708  T
Q  302 ctgagaattaatcactca 319  Q
     || ||  ||||||||||    
T  43978709 gtgggacataatcactca 43978726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 16143512 - 16143468
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctag 296  Q
    |||||||| | || |||||||||||||||||| ||||||||||||    
T  16143512 tatgggtctcgtctcttatatatccaacatttgctccatttctag 16143468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 19548267 - 19548169
Alignment:
Q  205 aagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    |||||||||| ||| ||||| | || |||||| ||||||||||||| |||  ||||| |||| |||||||||||||||||| ||| |||||||||||||    
T  19548267 aagagacttatacaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacatttcctctatttctagtcgat 19548169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 28226411 - 28226362
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    |||||||| |||| |||||||||||||| ||| |||||||||||||||||    
T  28226411 tatgggtctcctctcttatatatccaacgtttcctccatttctagtcgat 28226362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 19547935 - 19547894
Alignment:
Q  260 ccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    ||||| ||||||||||||||||||  ||||||||||||||||    
T  19547935 ccctctcttatatatccaacatttcttccatttctagtcgat 19547894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 40053236 - 40053187
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    ||||||||||||| |||||| ||| |||||||||||||||| ||| ||||    
T  40053236 tatgggtcccctctcttataaatctaacattttctccatttttagccgat 40053187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 40053528 - 40053479
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    ||||||| ||||| |||||||||||||||||| |||||||| ||| ||||    
T  40053528 tatgggttccctctcttatatatccaacatttcctccatttttagccgat 40053479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 10066673 - 10066574
Alignment:
Q  186 ctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattag--ctatgggtcccctcccttatatatccaacattt 283  Q
    |||||| ||||||| |||||||||| ||| | | ||||| | || ||||||||||||| ||||||   ||||| || |||  ||||||||||||||||||    
T  10066673 ctaaatgtccaggaccactaagagatttatataccacatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatccaacattt 10066574  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 43834618 - 43834486
Alignment:
Q  205 aagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattttctccatttctagtcgatc 302  Q
    |||||||||||||  ||||| | |||| |||| ||||||||||||| |||  |||||||||| ||||||||| ||||||||  ||||||  ||| ||||     
T  43834618 aagagacttagacgccacatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatattcaacatttcatccattcttagccgatg 43834519  T
Q  303 tgagaattaatcactca-acttaaaacccaaca 334  Q
    |||||  |||||||||| |||| ||||||||||    
T  43834518 tgagatataatcactcacacttgaaacccaaca 43834486  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 15327930 - 15327863
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    ||||||||||||| |||||||||| ||| ||| ||||||| ||||||||| |||||  ||||||||||    
T  15327930 tatgggtcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactca 15327863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 5822213 - 5822175
Alignment:
Q  205 aagagacttagacatcacattttcatccaaaatcttaag 243  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  5822213 aagagacttaaacatcacattttcatctaaaatcttaag 5822175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 4392232 - 4392343
Alignment:
Q  210 acttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacattttctccatttctagtcgatctgaga 307  Q
    ||||| ||| ||||| | |||||||||||||||| ||| || |||  ||||| ||||  ||||||||||||  ||| |||||||  |||||||| |||||    
T  4392232 acttatacaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttatatatccaatgtttcctccattcatagtcgatgtgaga 4392331  T
Q  308 attaatcactca 319  Q
      ||||||||||    
T  4392332 cataatcactca 4392343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 22562075 - 22561945
Alignment:
Q  207 gagacttagacatcacattttcatccaaaatcttaagacattag--ctatgggtcccctcccttatatatccaacattttctccatttctagtcgatctg 304  Q
    ||||||||||||||| || |||||||||||||||||| ||||||   ||| |  ||||||  ||||||||| ||| ||| ||||||| ||| ||||| |     
T  22562075 gagacttagacatcatatcttcatccaaaatcttaaggcattagatatatagaccccctctgttatatatctaacgtttcctccattcctattcgatata 22561976  T
Q  305 agaattaatcactca-acttaaaacccaaca 334  Q
     ||  |||||||||| |||||||||||||||    
T  22561975 tgacataatcactcacacttaaaacccaaca 22561945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 23578088 - 23578155
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    |||| ||| |||| |||||||||||||| ||||||||||||||| ||||| || || |||||||||||    
T  23578088 tatgtgtcacctctcttatatatccaacgttttctccatttctactcgatgtgggacttaatcactca 23578155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 2463300 - 2463164
Alignment:
Q  184 ggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacat 281  Q
    ||||||| |||||||| |||| ||||||| ||||| ||||  | ||||||||| ||| || | |||| |||  ||||||  || ||||||||||||||||    
T  2463300 ggctaaacatccaggaccacttagagactaagacaccacagct-catccaaaacctttaggctttaggtatatgggtccattctcttatatatccaacat 2463202  T
Q  282 tttctccatttctagtcgatctgagaattaatcactca 319  Q
    || |||  |||||||||||| |||||  ||||||||||    
T  2463201 ttcctcattttctagtcgatgtgagacataatcactca 2463164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 7631266 - 7631373
Alignment:
Q  231 ccaaaatcttaagacattagctat---gggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca-acttaaa 326  Q
    |||||| |||||| |||||| |||   ||||| |||| |||||||||||||||||||||||||||  ||||||| || || ||||  ||||| |||| ||    
T  7631266 ccaaaagcttaagccattaggtatatggggtctcctctcttatatatccaacattttctccattttcagtcgatgtgggacttaactactcacacttgaa 7631365  T
Q  327 acccaaca 334  Q
    ||||||||    
T  7631366 acccaaca 7631373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 301
Target Start/End: Original strand, 7301593 - 7301717
Alignment:
Q  180 aatgggctaaatatccaggatcactaagagacttagacatcacattttcatccaaaatc-ttaagacattagctat--gggtcccctcccttatatatcc 276  Q
    |||||||||||  || |||| |||||||||||||||||| || | | | | |||||| | |||||| ||||| |||  | ||||||||  |||||||||     
T  7301593 aatgggctaaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtatatgtgtcccctcttttatatatct 7301692  T
Q  277 aacattttctccatttctagtcgat 301  Q
    |||||||||||||||| ||||||||    
T  7301693 aacattttctccatttttagtcgat 7301717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 7301384 - 7301451
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgatctgagaattaatcactca 319  Q
    |||| |||||||  |||||||||||||| ||| ||||||||||||||||| || ||  ||||||||||    
T  7301384 tatgtgtcccctttcttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactca 7301451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 15092133 - 15092084
Alignment:
Q  252 tatgggtcccctcccttatatatccaacattttctccatttctagtcgat 301  Q
    ||||| ||||||| | |||||||||||||||||||| ||||||| |||||    
T  15092133 tatggatcccctctcgtatatatccaacattttctcaatttctaatcgat 15092084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 4102 - 4208
Alignment:
Q  204 taagagacttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatatccaacatttt-ctccatttctagtcga 300  Q
    ||||| ||||||||| ||||| | || ||||||  ||||||||| || |||  | |||||||| || |||||||||||||||| |||||||| |||||||    
T  4102 taagacacttagacaccacatctccacccaaaacattaagacatgaggtatatgtgtcccctctctcatatatccaacattttcctccatttatagtcga 4201  T
Q  301 tctgaga 307  Q
    | |||||    
T  4202 tgtgaga 4208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 29141 - 29046
Alignment:
Q  210 acttagacatcacattttcatccaaaatcttaagacattagctat--gggtcccctcccttatatat--ccaacattttctccatttctagtcgat 301  Q
    ||||||||| ||||| | || ||||||||||||||||| || |||  | |||||||| |||||||||  |||||||||| ||  ||||||||||||    
T  29141 acttagacaccacatctccacccaaaatcttaagacatcagatatatgagtcccctctcttatatatatccaacattttttcattttctagtcgat 29046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 13097462 - 13097510
Alignment:
Q  34 ctaacttgtaactactttaaacaatgttaaaataattctaacaaatctc 82  Q
    ||||||| ||||||||||||||||||||||| ||| | || ||||||||    
T  13097462 ctaacttttaactactttaaacaatgttaaactaagtataccaaatctc 13097510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 26420849 - 26420881
Alignment:
Q  269 atatatccaacattttctccatttctagtcgat 301  Q
    ||||||||||||||| |||||||||||||||||    
T  26420849 atatatccaacatttcctccatttctagtcgat 26420881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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