View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_high_17 (Length: 478)
Name: NF0831_high_17
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 30 - 471
Target Start/End: Complemental strand, 35323197 - 35322756
Alignment:
| Q |
30 |
ctctatgagcttatactcactcagaaattaacacatgtacatgtaccatacacacttttcatgccatacaagaaaaaatagtagtcgcatatgtcctata |
129 |
Q |
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| T |
35323197 |
ctctatgagcttatactcactcagaaattaacacatgtacatgtaccatacacacttttcatgccatacaagaaaaaatagtagtcgcatatgtcctata |
35323098 |
T |
|
| Q |
130 |
tgggtttactcactcacaagtttacacgtatgtaccatgtgaattcaatcatggtgaaaaaactgcaatgtggaatctcaaccgctagttatcaatcact |
229 |
Q |
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| T |
35323097 |
tgggtttactcactcacaagtttacacgtatgtaccatgtgaattcaatcatggtgaaaaaactgcaatgtggaatctcaaccgctagttatcaatcact |
35322998 |
T |
|
| Q |
230 |
acacatgctaaatctattctcgtgacaaaaatatttcctaaaggaagaaaatggtcatgaggtatcattcacaagagcacatggtgaaaagactgagggt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35322997 |
acacatgctaaatctattctcgtgacaaaaatatttcctaaaggaagaaaatggtcatgaggtatcattcacaagagcacatggtgaaaagactgagggt |
35322898 |
T |
|
| Q |
330 |
ttctatatttgtccatcaagaccaatccacaaataaagagaacttggtaaattatagaatttctttcaataaacgttcatatagttataaattccataag |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35322897 |
ttctatatttgtccatcaagaccaatccacaaataaagagaacttggtaaattatagaatttctttcaataaacgttcatatagttataaattccataag |
35322798 |
T |
|
| Q |
430 |
tcacataaattacattctcaaaattattacaggtctgtgctg |
471 |
Q |
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| T |
35322797 |
tcacataaattacattctcaaaattattacaggtttgtgctg |
35322756 |
T |
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