View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_high_19 (Length: 455)
Name: NF0831_high_19
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 29 - 445
Target Start/End: Complemental strand, 47323940 - 47323524
Alignment:
| Q |
29 |
aacaacatcaatatcatcaataataactttgtaccttgtattttcatccttgagaagcaataaaagacaatctataccaaggtattgccaatcatcacaa |
128 |
Q |
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| T |
47323940 |
aacaacatcaacatcatcaataataactttgtaccttgtattttcatccttgagaagcaataaaagacaatctataccaaggtattgccaatcatcacaa |
47323841 |
T |
|
| Q |
129 |
gatcttgagaggttacaaagtgttttcacaacttttggtaactcaacaannnnnnnncttccaatgttattataacaaaggattctaatgagtccaaacc |
228 |
Q |
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| T |
47323840 |
gatcttgagaggttacaaagtgttttcacaacttttggtaactcaacaattttttttcttccaatgttattataacaaaggattctaatgagtccaaacc |
47323741 |
T |
|
| Q |
229 |
cacctggtgaagtgtgattcatcaatccaccccacatatcacacaaatcatttaagaactcttttttgcatatgagattcaaagacttattgtaatcttt |
328 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47323740 |
cacctggtgaagtgttattcattaatccaccccacatatcacacaaatcatttaagaactcttttttgcatatgagattcaaagacttattgtaatcttt |
47323641 |
T |
|
| Q |
329 |
gcaagcaaaacaattcagaagataaatagaccaacattgaagttgactagcccattcctcggcttttcgattctccatttccaaatcacctaaacctctt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47323640 |
gcaagcaaaacaattcagaagataaatagaccaacattgaagttgactagcccattcctcggcttttcgattctccatttccaaatcacctaaacctctt |
47323541 |
T |
|
| Q |
429 |
gtaagcaagtttctgtg |
445 |
Q |
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||||||||||||||||| |
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| T |
47323540 |
gtaagcaagtttctgtg |
47323524 |
T |
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