View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_high_24 (Length: 401)
Name: NF0831_high_24
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_24 |
 | |
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| [»] scaffold0464 (1 HSPs) |
| | |
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| [»] scaffold0232 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 35184779 - 35184927
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||| || |||||| || |
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| T |
35184779 |
tgcaagctgagattgattctcttaaggataaggcttcacaagttgatattttgaaggcgcaagttgctttcttaatgcaaatgcaagagcaaaattcgag |
35184878 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaacaatatgctctt |
373 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| | ||||||| |
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|
| T |
35184879 |
agacaaagaggtaacttttacaaaactattgcaaaaacattctgctctt |
35184927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 4103951 - 4104089
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
4103951 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag |
4104050 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||| |
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|
| T |
4104051 |
agacaaagaggtaacttttaccaaactattgcaaaaaca |
4104089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 47914909 - 47914951
Alignment:
| Q |
239 |
gattctcttaaggataaggcttcacaagttgatatcttgaagg |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
47914909 |
gattcacttaaggataaggcttcacaagttgatatcttgaagg |
47914951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 15333706 - 15333844
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
15333706 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag |
15333805 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
15333806 |
agacaaagaggtaacttttaccaaactattgcaaaaaca |
15333844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 15514075 - 15514213
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
15514075 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag |
15514174 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
15514175 |
agacaaagaggtaacttttaccaaactattgcaaaaaca |
15514213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 15422802 - 15422940
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
15422802 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcacaagttgcttttttaatgcaaatgcaagtgcaaaattctag |
15422901 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
15422902 |
agacaaagaggtaacttttaccaaactattgcaaaaaca |
15422940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 18802638 - 18802776
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
18802638 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag |
18802737 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| |||||| |
|
|
| T |
18802738 |
agacaaagaggtaactcttaccaaactattgcaaaaaca |
18802776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 232 - 363
Target Start/End: Complemental strand, 14980215 - 14980086
Alignment:
| Q |
232 |
tgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctagagacaaa |
331 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14980215 |
tgagattgattctcttaaggagaaggcttcacaagttgatttcttgaacgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctagagacaaa |
14980116 |
T |
|
| Q |
332 |
gaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
||||| | ||||| |||||||||| |||||| |
|
|
| T |
14980115 |
gaggt--actttaccaaactattgcaaaaaca |
14980086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 14963267 - 14963405
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| ||||||||| |
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|
| T |
14963267 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag |
14963366 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
14963367 |
agacaaagaggtaacttttaccaaactattgcaaaaaca |
14963405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 343
Target Start/End: Original strand, 48630971 - 48631089
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| |||||||||||||||| || ||||||||| |
|
|
| T |
48630971 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaacgcgcaagttgcttttttaatgcaaatgcaagcgcaaaattctag |
48631070 |
T |
|
| Q |
325 |
agacaaagaggtaaatttt |
343 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
48631071 |
agacaaagaggtaactttt |
48631089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 363
Target Start/End: Complemental strand, 21301445 - 21301313
Alignment:
| Q |
225 |
tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag |
324 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |||| || ||||||||||| |||||| || |
|
|
| T |
21301445 |
tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgctttttt------aatgcaagtgcaaaattcaag |
21301352 |
T |
|
| Q |
325 |
agacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
21301351 |
agacaaagaggtaacttttaccaaactattgcaaaaaca |
21301313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 363
Target Start/End: Original strand, 3344 - 3485
Alignment:
| Q |
222 |
atgtgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattc |
321 |
Q |
| |
|
||||||||| || |||||||||||||| ||| |||||||| |||||||| ||||||||| | ||||| |||| |||||||||||| ||| || |||||| |
|
|
| T |
3344 |
atgtgcaagctgggattgattctcttagggagaaggcttccgaagttgatgtcttgaaggcgcaagttgctttattaatgcaaatgtaagcgcaaaattc |
3443 |
T |
|
| Q |
322 |
tagagacaaagaggtaaattttacaaaactattgctaaaaca |
363 |
Q |
| |
|
|||||||| || ||||| |||||| |||||||| | |||||| |
|
|
| T |
3444 |
tagagacagagtggtaatttttaccaaactatttcaaaaaca |
3485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 21266 - 21308
Alignment:
| Q |
239 |
gattctcttaaggataaggcttcacaagttgatatcttgaagg |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21266 |
gattcacttaaggataaggcttcacaagttgatatcttgaagg |
21308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 26349 - 26391
Alignment:
| Q |
239 |
gattctcttaaggataaggcttcacaagttgatatcttgaagg |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26349 |
gattcacttaaggataaggcttcacaagttgatatcttgaagg |
26391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 7190697 - 7190739
Alignment:
| Q |
239 |
gattctcttaaggataaggcttcacaagttgatatcttgaagg |
281 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7190697 |
gattcacttaaggataaggcttcacaagttgatatcttgaagg |
7190739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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