View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_29 (Length: 378)

Name: NF0831_high_29
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_29
NF0831_high_29
[»] chr4 (3 HSPs)
chr4 (202-350)||(35184779-35184927)
chr4 (202-340)||(4103951-4104089)
chr4 (216-258)||(47914909-47914951)
[»] chr8 (5 HSPs)
chr8 (202-340)||(15333706-15333844)
chr8 (202-340)||(15514075-15514213)
chr8 (202-340)||(15422802-15422940)
chr8 (202-340)||(18802638-18802776)
chr8 (209-340)||(14980086-14980215)
[»] chr6 (1 HSPs)
chr6 (202-340)||(14963267-14963405)
[»] chr7 (1 HSPs)
chr7 (202-320)||(48630971-48631089)
[»] chr5 (1 HSPs)
chr5 (202-340)||(21301313-21301445)
[»] scaffold0464 (1 HSPs)
scaffold0464 (199-340)||(3344-3485)
[»] scaffold0232 (2 HSPs)
scaffold0232 (216-258)||(21266-21308)
scaffold0232 (216-258)||(26349-26391)
[»] chr3 (1 HSPs)
chr3 (216-258)||(7190697-7190739)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 202 - 350
Target Start/End: Original strand, 35184779 - 35184927
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||| || |||||| ||    
T  35184779 tgcaagctgagattgattctcttaaggataaggcttcacaagttgatattttgaaggcgcaagttgctttcttaatgcaaatgcaagagcaaaattcgag 35184878  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaacaatatgctctt 350  Q
    |||||||||||||| ||||||||||||||||| |||||| | |||||||    
T  35184879 agacaaagaggtaacttttacaaaactattgcaaaaacattctgctctt 35184927  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 4103951 - 4104089
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||    
T  4103951 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 4104050  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  4104051 agacaaagaggtaacttttaccaaactattgcaaaaaca 4104089  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 47914909 - 47914951
Alignment:
Q  216 gattctcttaaggataaggcttcacaagttgatatcttgaagg 258  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  47914909 gattcacttaaggataaggcttcacaagttgatatcttgaagg 47914951  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 15333706 - 15333844
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||||| |||||||||    
T  15333706 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 15333805  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  15333806 agacaaagaggtaacttttaccaaactattgcaaaaaca 15333844  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 15514075 - 15514213
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||||| |||||||||    
T  15514075 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 15514174  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  15514175 agacaaagaggtaacttttaccaaactattgcaaaaaca 15514213  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 15422802 - 15422940
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||   ||||| |||| ||||||||||||||||||| |||||||||    
T  15422802 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcacaagttgcttttttaatgcaaatgcaagtgcaaaattctag 15422901  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  15422902 agacaaagaggtaacttttaccaaactattgcaaaaaca 15422940  T

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Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 18802638 - 18802776
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||    
T  18802638 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 18802737  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| | |||| |||||||||| ||||||    
T  18802738 agacaaagaggtaactcttaccaaactattgcaaaaaca 18802776  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 340
Target Start/End: Complemental strand, 14980215 - 14980086
Alignment:
Q  209 tgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctagagacaaa 308  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  14980215 tgagattgattctcttaaggagaaggcttcacaagttgatttcttgaacgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctagagacaaa 14980116  T
Q  309 gaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||  | ||||| |||||||||| ||||||    
T  14980115 gaggt--actttaccaaactattgcaaaaaca 14980086  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 14963267 - 14963405
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| ||||||||||||||||||| |||||||||    
T  14963267 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaatgcgcaagttgcttttttaatgcaaatgcaagtgcaaaattctag 14963366  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  14963367 agacaaagaggtaacttttaccaaactattgcaaaaaca 14963405  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 320
Target Start/End: Original strand, 48630971 - 48631089
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | | ||||| |||| |||||||||||||||| || |||||||||    
T  48630971 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaacgcgcaagttgcttttttaatgcaaatgcaagcgcaaaattctag 48631070  T
Q  302 agacaaagaggtaaatttt 320  Q
    |||||||||||||| ||||    
T  48631071 agacaaagaggtaactttt 48631089  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 21301445 - 21301313
Alignment:
Q  202 tgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattctag 301  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |||| ||      ||||||||||| |||||| ||    
T  21301445 tgcaagctgagattgattctcttaaggagaaggcttcacaagttgatttcttgaaggcgcaagttgctttttt------aatgcaagtgcaaaattcaag 21301352  T
Q  302 agacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||||||||| |||||| |||||||||| ||||||    
T  21301351 agacaaagaggtaacttttaccaaactattgcaaaaaca 21301313  T

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Target: scaffold0464 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 340
Target Start/End: Original strand, 3344 - 3485
Alignment:
Q  199 atgtgcaagttgagattgattctcttaaggataaggcttcacaagttgatatcttgaaggtgtaagttactttcttaatgcaaatgcaagtgcgaaattc 298  Q
    ||||||||| || |||||||||||||| ||| ||||||||  |||||||| ||||||||| | ||||| |||| |||||||||||| ||| || ||||||    
T  3344 atgtgcaagctgggattgattctcttagggagaaggcttccgaagttgatgtcttgaaggcgcaagttgctttattaatgcaaatgtaagcgcaaaattc 3443  T
Q  299 tagagacaaagaggtaaattttacaaaactattgctaaaaca 340  Q
    |||||||| || ||||| |||||| |||||||| | ||||||    
T  3444 tagagacagagtggtaatttttaccaaactatttcaaaaaca 3485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 21266 - 21308
Alignment:
Q  216 gattctcttaaggataaggcttcacaagttgatatcttgaagg 258  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  21266 gattcacttaaggataaggcttcacaagttgatatcttgaagg 21308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 26349 - 26391
Alignment:
Q  216 gattctcttaaggataaggcttcacaagttgatatcttgaagg 258  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  26349 gattcacttaaggataaggcttcacaagttgatatcttgaagg 26391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 7190697 - 7190739
Alignment:
Q  216 gattctcttaaggataaggcttcacaagttgatatcttgaagg 258  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  7190697 gattcacttaaggataaggcttcacaagttgatatcttgaagg 7190739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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