View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_3 (Length: 727)

Name: NF0831_high_3
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_3
NF0831_high_3
[»] chr5 (7 HSPs)
chr5 (266-724)||(4893494-4893952)
chr5 (29-265)||(4893227-4893466)
chr5 (431-695)||(4917113-4917377)
chr5 (434-695)||(4910061-4910322)
chr5 (98-144)||(10957199-10957244)
chr5 (98-143)||(2868365-2868410)
chr5 (98-143)||(22811081-22811126)
[»] chr3 (3 HSPs)
chr3 (98-143)||(42644303-42644348)
chr3 (98-143)||(7012681-7012726)
chr3 (98-143)||(10852728-10852773)
[»] chr7 (1 HSPs)
chr7 (98-142)||(41841180-41841224)
[»] chr8 (1 HSPs)
chr8 (98-143)||(19649235-19649280)
[»] chr6 (1 HSPs)
chr6 (98-143)||(25208723-25208768)
[»] chr4 (1 HSPs)
chr4 (98-143)||(36150630-36150675)
[»] chr2 (1 HSPs)
chr2 (98-143)||(23359943-23359988)
[»] chr1 (2 HSPs)
chr1 (98-143)||(4347039-4347084)
chr1 (102-143)||(7335899-7335940)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 266 - 724
Target Start/End: Original strand, 4893494 - 4893952
Alignment:
Q  266 actctagttactctaaacatgaaaccaaacctaaatagtcatgtcagcaattcatattcatatgatgtgaattaattggtgcaaagttgttacaactact 365  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4893494 actctagttgctctaaacatgaaaccaaacctaaatagtcatgttagcaattcatattcatatgatgtgaattaattggtgcaaggttgttacaactact 4893593  T
Q  366 atataggtagctattaattataggaattttagcatctaagtaaactttattatgttgtnnnnnnntctacagatggacaaggcttcagtcctaggagatg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  4893594 atataggtagctattaattataggaattttagcatctaagtaaactttattatgttgtaaaaaaatctacagatggacaaggcttcagtcctaggagatg 4893693  T
Q  466 caatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcatgttcagtctgtggtgacggttgatgaaccaca 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4893694 caatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcatgttcagtctgtggtgacggttgatgaacaaca 4893793  T
Q  566 actaagttacgactcatcaaacagtgatgactctgaagctgctagtggtattaatgaaactctcccacatgtagaagccaaagttttggacaaggatgtg 665  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4893794 actaagttacgactcatcaaacagtgatgactctgaagttgctagtggtaataatgaaactctcccacatgtagaagccaaagttttggacaaggatgtg 4893893  T
Q  666 ctcattaggatccattgccaaaagcaaaagggacttttgctcaaaatattcttcgagat 724  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  4893894 ctcataaggatccattgccaaaagcaaaagggacttttgctcaaaatattggtcgagat 4893952  T

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Target: chr5; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 29 - 265
Target Start/End: Original strand, 4893227 - 4893466
Alignment:
Q  29 agtttcaacatattatatgtttggatttaccgtgatacatgttgaattttagtaaattatttttattagattgattttatttaaaagtgac----atgaa 124  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    |||||    
T  4893227 agtttcaacaaattatatgtttggatttacagtgatacatgttgaattttagtaaattaattttgttagattgattttatttaaaagtgacatgaatgaa 4893326  T
Q  125 tgtaaagtgatttatgtttttaatacatttatatagaattgatttgaacaacaaatttaagtgnnnnnnngatcacatttagactcaaaagctataaatc 224  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  4893327 tgtaaagtgatttatgtttttaatacatttacata-aattgatttgaacaacaaatttaagtgaaaaaaagatcacatttagactcaaaagctataaatc 4893425  T
Q  225 ctaacctctatttaaaatcaattttagatgcaaaatcaatt 265  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4893426 ctaacctctatttaaaatcaattttagatgcaaaatcaatt 4893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 431 - 695
Target Start/End: Original strand, 4917113 - 4917377
Alignment:
Q  431 tctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagt 530  Q
    |||| |||||||||||||||||||| |||| ||||| |||||| | || ||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  4917113 tctatagatggacaaggcttcagtcataggggatgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaatagt 4917212  T
Q  531 catgttcagtctgtggtgacggttgatgaaccacaactaagttacgactcatcaaacagtgatgactctgaagctgctagtggtattaatgaaactctcc 630  Q
    | | || ||| ||| |||||| || |  ||||  | |||| ||| || ||||  |    |||||  ||| | |||||||||| || ||||||||||||||    
T  4917213 cctattgagtttgtagtgacgcttaacaaaccgaagctaaattatgagtcatggagtgatgatggttctaaggctgctagtgctaataatgaaactctcc 4917312  T
Q  631 cacatgtagaagccaaagttttggacaaggatgtgctcattaggatccattgccaaaagcaaaag 695  Q
    | ||||| ||||||||| |||||| ||| || || ||||| |||||||| |||||||| ||||||    
T  4917313 ctcatgtggaagccaaaattttgggcaaagacgttctcataaggatccagtgccaaaaacaaaag 4917377  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 434 - 695
Target Start/End: Original strand, 4910061 - 4910322
Alignment:
Q  434 acagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaatagtcat 533  Q
    ||||| ||||||  |||||||| |||||||||| |||||| | |||||||||||||| ||||||||||| |||||||| ||| | ||||| |||||||||    
T  4910061 acagacggacaatacttcagtcataggagatgctatcaagcatgtgaaagagctccaggaacgtttgagagtattagaagaagagaacaagaatagtcat 4910160  T
Q  534 gttcagtctgtggtgacggttgatgaaccacaactaagttacgactcatcaaacagtgatgactctgaagctgctagtggtattaatgaaactctcccac 633  Q
     || | ||||| |||||| || |  ||   |  |||| |||| | ||||  |    |||||  ||| | |||||||||| || ||||||| ||||||| |    
T  4910161 attgaatctgtagtgacgcttaacaaattgctgctaatttacaagtcatggagtgatgatggttctaaggctgctagtgctaataatgaatctctccctc 4910260  T
Q  634 atgtagaagccaaagttttggacaaggatgtgctcattaggatccattgccaaaagcaaaag 695  Q
    | || || |||||| ||||||||||  | |||||||| |||||||| |||||||||||||||    
T  4910261 acgtggatgccaaaattttggacaaaaacgtgctcataaggatccagtgccaaaagcaaaag 4910322  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 10957199 - 10957244
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgtttt 144  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||||    
T  10957199 attgattttagttaaaagtgacttgaatgtaaa-tgatttatgtttt 10957244  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 2868365 - 2868410
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||| ||||||||||  |||||||||||||||||| ||||    
T  2868365 attgattttagttaaaagtgagttgaatgtaaagtgatttaagttt 2868410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 22811126 - 22811081
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  22811126 attgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 22811081  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 42644348 - 42644303
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  42644348 attgattttagttaaaagtgagttgaatgtaaagtgatttatgttt 42644303  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 7012726 - 7012681
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  7012726 attgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 7012681  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 10852728 - 10852773
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  10852728 attgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 10852773  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 41841224 - 41841180
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgtt 142  Q
    |||||||||| || |||||||| ||||||||||||||||||||||    
T  41841224 attgattttacttgaaagtgacttgaatgtaaagtgatttatgtt 41841180  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 19649280 - 19649235
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  19649280 attgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 19649235  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 25208768 - 25208723
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||| ||||||||||  |||||||||| ||||||||||||    
T  25208768 attgattttaattaaaagtgagttgaatgtaaaatgatttatgttt 25208723  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 36150675 - 36150630
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  36150675 attgattttgattaaaagtgagttgaatgtaaagtgatttatgttt 36150630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 23359943 - 23359988
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  23359943 attgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 23359988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 4347084 - 4347039
Alignment:
Q  98 attgattttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||||||  ||||||||||  |||||||||||||||||||||||    
T  4347084 attgattttggttaaaagtgagttgaatgtaaagtgatttatgttt 4347039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 7335899 - 7335940
Alignment:
Q  102 attttatttaaaagtgacatgaatgtaaagtgatttatgttt 143  Q
    |||||| ||||||||||  |||||||||||||||||||||||    
T  7335899 attttagttaaaagtgagttgaatgtaaagtgatttatgttt 7335940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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