View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_high_4 (Length: 687)
Name: NF0831_high_4
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 204 - 642
Target Start/End: Complemental strand, 8164863 - 8164427
Alignment:
| Q |
204 |
aatatacgccggaccttttcaaccggtttaaggtaagttgaataattttattgattgcagacgaaatgtgtgtggaaatcatgtcatgatcctaaaaatg |
303 |
Q |
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|||||| || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8164863 |
aatatatgcgggaccttttcaatcgatttaaggtaagttgaataattttattgattgcagacgaaatgtgtgtggaaatcatgtcatgatcctaaaattg |
8164764 |
T |
|
| Q |
304 |
agaaatttttcatcagagagcctcaacccatcttgctcatattatagtcacataattatcttgacatgctgcgaaccgcaaattggtacctccgtaccaa |
403 |
Q |
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||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
8164763 |
agaaatttt-catcacagagcctcagcccatcttgctcatattatagtcacataattatcttgacatgctgcgaaccacaaattgatacctccgtaccag |
8164665 |
T |
|
| Q |
404 |
ttcgtggtacttatgcgaattggattgcacttcgcacaaattcccgttacaaaatttaacatttacataaggacgtgtatataaccttttaacatttgcc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8164664 |
ttcgtggtacttatgcgaattggattgcacttcgcacaaatttccatcacaaaatttaacatttacataaggacgtgtatataacc-tttaacatttgcc |
8164566 |
T |
|
| Q |
504 |
taattannnnnnnngacattttcctagggagaaattttaatatttgtctgctacgtaacatgtatataacgtttaagtctacttaaaaatatttctaaaa |
603 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8164565 |
taattatttatttcgacattttcctagggagaaattttaatatttgtctggtacgtaacatgtatataacgtttaagtctacttaaaaatatttctaaaa |
8164466 |
T |
|
| Q |
604 |
taattattaatatcactttaattgataatagtttatctc |
642 |
Q |
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| T |
8164465 |
taattattaatatcactttaattgataatagtttatctc |
8164427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 8165087 - 8164912
Alignment:
| Q |
30 |
gatagacaaaatacacaaaatgaagttactactaaaagttaaaa-gtcattagttggttttattaatcatttgtcttcgcggtcgttattctgcgaaaga |
128 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8165087 |
gatagacaaaatacacaaaatgacgttactactaaaagttaaaaagtcattagtcggttttattaatcatttgtcttcgcggtcgttattctgcgaaaga |
8164988 |
T |
|
| Q |
129 |
gaacagttacttgatagaatataaagagttgcagtcacttgaagtttcttttcattagcttaaccaaacagaccaa |
204 |
Q |
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| T |
8164987 |
gaacaattacttgatagaagataaagagttgcagtcacttgaggtttcttttcattagcttaaccaaacagaccaa |
8164912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 10695984 - 10696063
Alignment:
| Q |
347 |
atagtcacataattatcttgacatgctgcgaaccgcaaattggtacctccgtaccaattcgtggtacttatgcgaattgg |
426 |
Q |
| |
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|||||||||||||| |||| ||||| ||||||| || ||||||||| | ||||| ||||| |||||| |||||||||| |
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|
| T |
10695984 |
atagtcacataattctcttaacatgatgcgaactgcgaattggtacttatgtaccggttcgtagtacttttgcgaattgg |
10696063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 29849137 - 29849066
Alignment:
| Q |
355 |
ataattatcttgacatgctgcgaaccgcaaattggtacctccgtaccaattcgtggtacttatgcgaattgg |
426 |
Q |
| |
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| T |
29849137 |
ataattctcttgacatgttgcgaactgcgaattggtacttgcgtaccagttcgtggtacttttgcgaattgg |
29849066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 32723135 - 32723081
Alignment:
| Q |
347 |
atagtcacataattatcttgacatgctgcgaaccgcaaattggtacctccgtacc |
401 |
Q |
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|||||||||||||||||||| |||||| |||||| ||||||| ||| | |||||| |
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| T |
32723135 |
atagtcacataattatcttggcatgcttcgaacctcaaattgatacttacgtacc |
32723081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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