View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_50 (Length: 276)

Name: NF0831_high_50
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_50
NF0831_high_50
[»] chr1 (4 HSPs)
chr1 (16-276)||(13854418-13854679)
chr1 (16-107)||(31187327-31187418)
chr1 (16-107)||(31009503-31009594)
chr1 (43-107)||(29900176-29900240)
[»] chr4 (2 HSPs)
chr4 (16-87)||(34392258-34392328)
chr4 (16-107)||(52153012-52153103)
[»] chr7 (2 HSPs)
chr7 (16-95)||(39807990-39808069)
chr7 (16-87)||(47695608-47695679)
[»] chr2 (1 HSPs)
chr2 (16-107)||(26466769-26466860)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 13854679 - 13854418
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggtgtgattct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854679 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggtgtgattct 13854580  T
Q  116 cccaccgttcattttgttattttagtaaagttctattagtttaccatctcattcttgtattaagtgtatt-ttttatctatatctcaatgttttcatcac 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  13854579 cccaccgttcattttgttattttagtaaagttctatcagtttaccatcccattcttgtattaagtgtatttttttatctatttctcaatgttttcatcac 13854480  T
Q  215 ctgcgaagcactgacacaaacactgaacatgacactgacacatcgacatcagtgataatttt 276  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13854479 cagtgaagcactgacacaaacactgaacatgacactgacacatcgacatcggtgataatttt 13854418  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 31187418 - 31187327
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggt 107  Q
    ||||||||||||||||| ||||| |||| |||||||||||| ||  | || ||||| |||||||||||||| || |||||||| || |||||    
T  31187418 atggagcaagaggaatacacaaaagaagggattgattggagctacttagaatttgtagataatcaagatgtgctagatctcattgaaaaggt 31187327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 31009594 - 31009503
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggt 107  Q
    ||||||||||||||||| ||||| |||| |||||||||||| ||  | || ||||| || ||||||||||| || |||||||| || |||||    
T  31009594 atggagcaagaggaatacacaaaagaagcgattgattggagctacttagaatttgtagacaatcaagatgtactagatctcattgaaaaggt 31009503  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 29900240 - 29900176
Alignment:
Q  43 gagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggt 107  Q
    ||||||||||||||||| || || |||||||| ||||||||| || | |||||||| || |||||    
T  29900240 gagattgattggagttacattgaatttgttgacaatcaagatattttggatctcattgaaaaggt 29900176  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34392258 - 34392328
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgtt 87  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||    
T  34392258 atggagcaagagaaatatacaa-ggaagagattgattggagttatatcgagttcgttgataatcaatatgtt 34392328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 52153103 - 52153012
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggt 107  Q
    ||||| ||||| ||||| || || ||||| || ||||||||||| || ||||||||||| || ||||||||| | ||||| || ||||||||    
T  52153103 atggaacaagaagaatacaccaaagaagaaatcgattggagttacatagagtttgttgacaaccaagatgttttggatctaattgagaaggt 52153012  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 39807990 - 39808069
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatct 95  Q
    ||||||||||| ||||| | ||| ||||| |||||||||||||| || || ||||| |||||||||||| |||| |||||    
T  39807990 atggagcaagaagaatacaaaaaagaagaaattgattggagttacattgaatttgtggataatcaagatattctggatct 39808069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 47695608 - 47695679
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgtt 87  Q
    ||||| ||||| ||||||||||||||| ||||  ||||||| || || || |||||||| ||||||||||||    
T  47695608 atggaacaagaagaatatacaaaggaacagatcaattggagctacattgaatttgttgacaatcaagatgtt 47695679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26466769 - 26466860
Alignment:
Q  16 atggagcaagaggaatatacaaaggaagagattgattggagttatatcgagtttgttgataatcaagatgttcttgatctcatagagaaggt 107  Q
    ||||||||||| || || ||||| || || ||||||||||| ||| | || ||||| |||||||| |||||||||||||| || ||||||||    
T  26466769 atggagcaagaagagtacacaaaagaggaaattgattggagctatgtagaatttgtggataatcaggatgttcttgatcttattgagaaggt 26466860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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