View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_56 (Length: 253)

Name: NF0831_high_56
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_56
NF0831_high_56
[»] chr1 (6 HSPs)
chr1 (58-225)||(41752942-41753108)
chr1 (1-45)||(33936489-33936533)
chr1 (1-45)||(34549419-34549463)
chr1 (1-45)||(45432374-45432418)
chr1 (1-45)||(19227887-19227931)
chr1 (185-245)||(40864718-40864778)
[»] chr7 (10 HSPs)
chr7 (61-155)||(34224678-34224771)
chr7 (173-244)||(38575289-38575360)
chr7 (174-245)||(26493713-26493784)
chr7 (173-244)||(27387306-27387377)
chr7 (173-244)||(19400082-19400153)
chr7 (174-245)||(25024628-25024699)
chr7 (1-45)||(11621420-11621464)
chr7 (174-242)||(14088853-14088921)
chr7 (174-242)||(14398871-14398939)
chr7 (1-45)||(40871302-40871346)
[»] chr3 (6 HSPs)
chr3 (173-244)||(31989133-31989204)
chr3 (173-244)||(24908393-24908464)
chr3 (181-244)||(51408609-51408672)
chr3 (173-244)||(53710502-53710573)
chr3 (173-239)||(43585913-43585979)
chr3 (174-242)||(37381871-37381939)
[»] chr5 (2 HSPs)
chr5 (173-245)||(22541990-22542062)
chr5 (173-245)||(203954-204026)
[»] scaffold0019 (1 HSPs)
scaffold0019 (173-245)||(134853-134925)
[»] chr8 (5 HSPs)
chr8 (1-45)||(13089766-13089810)
chr8 (174-245)||(30791457-30791528)
chr8 (174-244)||(21958617-21958687)
chr8 (174-245)||(13152393-13152464)
chr8 (4-45)||(4034301-4034342)
[»] chr6 (3 HSPs)
chr6 (173-245)||(11971063-11971135)
chr6 (1-45)||(12912248-12912292)
chr6 (1-45)||(18972614-18972658)
[»] scaffold0015 (1 HSPs)
scaffold0015 (174-244)||(214161-214231)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-45)||(1033-1077)
[»] chr4 (3 HSPs)
chr4 (174-245)||(3074474-3074545)
chr4 (1-38)||(37870653-37870690)
chr4 (173-245)||(25182878-25182950)
[»] chr2 (3 HSPs)
chr2 (186-245)||(12539690-12539749)
chr2 (185-245)||(13309705-13309765)
chr2 (174-242)||(19951833-19951901)
[»] scaffold0007 (1 HSPs)
scaffold0007 (204-245)||(260053-260094)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-45)||(94936-94980)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 41752942 - 41753108
Alignment:
Q  58 caaatatacctctataaaacacgtgtacctctagaaacattgaggcttcaattttgttattgagagtatttcataattttagaataagtatttcttccnn 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||      
T  41752942 caaatatacctctataaaacacgtgtacctctagaaacattgaggcttcaattttgttattgagagta-ttcataattttagaacaagtatttcttccaa 41753040  T
Q  158 nnnnnttaatgatttgaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctatt 225  Q
         ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  41753041 aaaatttaatgatttgaaagaggtcgcagaaatggcatttatcttataattttatttagcacgttatt 41753108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33936489 - 33936533
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  33936489 ctgaaatctccagactttcagtaatataatccattttaacttctt 33936533  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34549419 - 34549463
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  34549419 ctgaaatctccagacttttagtaatataatccattttagcttctt 34549463  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45432418 - 45432374
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  45432418 ctgaaatctccagacttttagtaatataatccattttagcttctt 45432374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19227931 - 19227887
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  19227931 ctgaaatctccaggctttcagtaatataatccattttagcttctt 19227887  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 40864778 - 40864718
Alignment:
Q  185 agaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||| |||||| ||  |||||||||||||||| ||||||||| ||||| || ||||||    
T  40864778 agaaagggcatttacctcctaattttatttagcacactattaacaggttatgttacatctc 40864718  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 34224771 - 34224678
Alignment:
Q  61 atatacctctataaaacacgtgtacctctagaaacattgaggcttcaattttgttattgagagtatttcataattttagaataagtatttcttcc 155  Q
    |||||||| ||||||||| |||| ||||  ||||||| |||| |||| ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  34224771 atatacctttataaaacatgtgtccctccggaaacatggagggttcatttttgttattgagagta-ttcataattttagaacaagtatttcttcc 34224678  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 38575360 - 38575289
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    |||||||||||| ||||| ||||||| ||  |||||||||||||||||||||| ||| ||||||||||||||    
T  38575360 gaaagaggtcgcggaaagaacatttacctcctaattttatttagcacgctattgacaggttatatttcatct 38575289  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 26493784 - 26493713
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||||| | |||||| |||||| ||  |||||||||||||||||||||| ||| |||||||||||||||    
T  26493784 aaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgacaggttatatttcatctc 26493713  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 27387377 - 27387306
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    |||||||||||| |||||  |||||| ||  |||||||||||||||||||||| ||| ||||||||||||||    
T  27387377 gaaagaggtcgcggaaagagcatttacctcctaattttatttagcacgctattgacaggttatatttcatct 27387306  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 19400082 - 19400153
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    |||||||||||| ||||||  ||||| ||  ||||||||||||||||||||||  || ||||||||||||||    
T  19400082 gaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattggcaggttatatttcatct 19400153  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 25024628 - 25024699
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||||| |||||||| |||||| ||  |||||||||| |||| | |||| ||| |||||||||||||||    
T  25024628 aaagaggtctcagaaagggcatttacctcctaattttattaagcatgttattgacatgttatatttcatctc 25024699  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11621420 - 11621464
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||||    
T  11621420 ctgaaatctccaggctttcagtaatataatccattttagcttctt 11621464  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 14088853 - 14088921
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcat 242  Q
    ||||||||| | |||| | |||||| ||  |||||||||||||||| ||||| ||| ||||||||||||    
T  14088853 aaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttatatttcat 14088921  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 14398871 - 14398939
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcat 242  Q
    ||||||||| | |||| | |||||| ||  |||||||||||||||| ||||| ||| ||||||||||||    
T  14398871 aaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttatatttcat 14398939  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40871346 - 40871302
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  40871346 ctgaaatctccaggcttttaataatataatccattttagcttctt 40871302  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 31989133 - 31989204
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    |||||||||||| |||||| |||||| ||  |||||||||||||||||| ||||||| ||||||||||||||    
T  31989133 gaaagaggtcgcggaaagggcatttacctcctaattttatttagcacgccattaacaggttatatttcatct 31989204  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 24908464 - 24908393
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    |||||||||||| ||||||  ||||| ||  |||||||||||||||||||||| ||| ||||||||||||||    
T  24908464 gaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattcacaggttatatttcatct 24908393  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 51408672 - 51408609
Alignment:
Q  181 tcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    ||||||||||| |||||| ||  |||||||||||||||||||||| ||| ||||||||||||||    
T  51408672 tcgcagaaagggcatttacctcctaattttatttagcacgctattgacatgttatatttcatct 51408609  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 53710502 - 53710573
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    |||||||||| | |||||| |||||| ||  |||||||||||||||||||||| ||| ||||||||| ||||    
T  53710502 gaaagaggtcacggaaagggcatttacctcctaattttatttagcacgctattgacaggttatattttatct 53710573  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 43585913 - 43585979
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatattt 239  Q
    ||||||| ||| ||||| |||||||| ||  ||||||||||||||||||||||| || |||||||||    
T  43585913 gaaagagatcgtagaaaagacatttacctcctaattttatttagcacgctattatcaggttatattt 43585979  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 37381939 - 37381871
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcat 242  Q
    ||||||||| | |||| |||||||  ||  |||||||||| ||||||||||| ||| ||||||||||||    
T  37381939 aaagaggtctcggaaatgacatttgcctcctaattttattcagcacgctattgacaggttatatttcat 37381871  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 22541990 - 22542062
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    |||||||||||| |||||| |||||| || |||||||||||||||||||||||  || |||||||||| ||||    
T  22541990 gaaagaggtcgcggaaagggcatttacctcataattttatttagcacgctattgtcaggttatatttcttctc 22542062  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 203954 - 204026
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    |||||||||| | ||||||||||||| ||  |||||||||||||||| ||||| |||  ||||||||||||||    
T  203954 gaaagaggtctcggaaaggacatttacctcctaattttatttagcacactattgacaaattatatttcatctc 204026  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 134925 - 134853
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    |||||||||| | |||||| |||||| ||  |||||||||||||||||||||| | | |||||||||||||||    
T  134925 gaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgataggttatatttcatctc 134853  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13089810 - 13089766
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  13089810 ctgaaatctccagacttttagtaatataatccattttagcttctt 13089766  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 30791528 - 30791457
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||||| | |||||| |||||| |   |||||||||||||||||||||| ||| |||||||||||||||    
T  30791528 aaagaggtctcggaaagggcatttaccacctaattttatttagcacgctattgacaggttatatttcatctc 30791457  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 21958617 - 21958687
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    ||||||||||| ||||||  ||||| ||  ||||||||||||||||||||||  || ||||||||||||||    
T  21958617 aaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 21958687  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 13152464 - 13152393
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||||| | |||||| |||||| ||  |||||||||||||||| ||||| ||| ||||| |||||||||    
T  13152464 aaagaggtctcggaaagggcatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 13152393  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4034342 - 4034301
Alignment:
Q  4 aaatctacagacttttagtaatataatccattttaacttctt 45  Q
    |||||| |||||||||||||||||||| ||||||| ||||||    
T  4034342 aaatcttcagacttttagtaatataattcattttagcttctt 4034301  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 11971063 - 11971135
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    |||||||||| |||||||| |||||| ||  |||||||||||||||| ||||| ||| ||||| |||||||||    
T  11971063 gaaagaggtctcagaaagggcatttacctcctaattttatttagcacactattgacaggttatgtttcatctc 11971135  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12912292 - 12912248
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  12912292 ctgaaatctccagacttttagtaatataatccattttagcttctt 12912248  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18972658 - 18972614
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    |||||||||  || ||||||||||||||||| |||||||||||||    
T  18972658 ctgaaatctcaaggcttttagtaatataatcaattttaacttctt 18972614  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 214231 - 214161
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatct 244  Q
    ||||||||||| ||||||  ||||| ||  ||||||||||||||||||||||  || ||||||||||||||    
T  214231 aaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 214161  T

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Target: scaffold0037 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1033 - 1077
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||    
T  1033 ctgaaatctccagactttttgtaatataatccattttagcttctt 1077  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 3074474 - 3074545
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||||| ||| |||| |||||||||  |||||||||||||||| |||||  || ||||| |||||||||    
T  3074474 aaagaggtctcaggaagggcatttatctcctaattttatttagcacactattggcaagttatgtttcatctc 3074545  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37870690 - 37870653
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccatttta 38  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  37870690 ctgaaatctccagactttgagtaatataatccatttta 37870653  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 25182950 - 25182878
Alignment:
Q  173 gaaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    |||||||||| |  |||||  ||||| ||| |||||||||||||||| ||||| | | |||||||||||||||    
T  25182950 gaaagaggtctcgaaaagggtatttaccttctaattttatttagcacactattgataggttatatttcatctc 25182878  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 12539690 - 12539749
Alignment:
Q  186 gaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||| ||||||| ||  |||||||||||||||| ||||| ||||||||| |||||||||    
T  12539690 gaaagaacatttacctcctaattttatttagcacactattgacacgttatgtttcatctc 12539749  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 13309705 - 13309765
Alignment:
Q  185 agaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcatctc 245  Q
    ||||||| |||||| || ||||| ||||||||||| ||||| |||  ||||||||||||||    
T  13309705 agaaagggcatttacctcataatattatttagcacactattgacagattatatttcatctc 13309765  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 19951901 - 19951833
Alignment:
Q  174 aaagaggtcgcagaaaggacatttatcttataattttatttagcacgctattaacacgttatatttcat 242  Q
    ||||||||| |  ||||| |||||| ||| |||||| ||||||||| ||||| ||| ||||||||||||    
T  19951901 aaagaggtctcgaaaagggcatttaccttctaatttaatttagcacactattgacaggttatatttcat 19951833  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 260053 - 260094
Alignment:
Q  204 taattttatttagcacgctattaacacgttatatttcatctc 245  Q
    |||||||||||||||||||||| |||  ||||||||||||||    
T  260053 taattttatttagcacgctattgacagattatatttcatctc 260094  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 94936 - 94980
Alignment:
Q  1 ctgaaatctacagacttttagtaatataatccattttaacttctt 45  Q
    ||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  94936 ctgaaatctccaggcttttaataatataatccattttagcttctt 94980  T

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