View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_high_68 (Length: 226)
Name: NF0831_high_68
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_high_68 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37912357 - 37912478
Alignment:
| Q |
1 |
taaaaaatcaaattgaacaacacggaatgaagaaaacggaaaacggtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcggaagaac |
100 |
Q |
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| T |
37912357 |
taaaaaataaaattgaacaacacggaatgaagaaaacggaaaacagtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcagaagaac |
37912456 |
T |
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| Q |
101 |
gatctgaacgagaagatgaaaa |
122 |
Q |
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||||||||| |||||||||||| |
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| T |
37912457 |
gatctgaacaagaagatgaaaa |
37912478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37905846 - 37905922
Alignment:
| Q |
1 |
taaaaaatcaaattgaacaacacggaatgaagaaaacggaaaacggtaccgtctttggcgaattcggaaaggacaaa |
77 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37905846 |
taaaaaataaaattgaacaacacggaatgaagaaaacggaaaacagtaccgtctttggcgaattcggaaaggacaaa |
37905922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 26464077 - 26464189
Alignment:
| Q |
2 |
aaaaaatcaaattgaacaacacggaatgaagaaaacggaaaacggtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcggaagaacg |
101 |
Q |
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|||||||| |||||||| || |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
26464077 |
aaaaaatcgaattgaaccacgcggaatgacaaaaacggaaaacggt--------tggcgaattcggagaggacgaagagagcacaattagcggaagaaca |
26464168 |
T |
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| Q |
102 |
atctgaacgagaagatgaaaa |
122 |
Q |
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|| |||| ||||||| ||||| |
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| T |
26464169 |
atttgaaggagaagacgaaaa |
26464189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 31197858 - 31197919
Alignment:
| Q |
55 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaaga |
116 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||| | |||| ||||||| |
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| T |
31197858 |
ttggcgaattcggagaggacggagagagcacaattagcggaagaacggtttgaaggagaaga |
31197919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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