View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_high_9 (Length: 531)

Name: NF0831_high_9
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_high_9
NF0831_high_9
[»] chr3 (15 HSPs)
chr3 (9-502)||(27629467-27629962)
chr3 (147-502)||(34488099-34488454)
chr3 (147-502)||(34522305-34522661)
chr3 (17-150)||(34522102-34522235)
chr3 (17-150)||(34487896-34488029)
chr3 (147-337)||(34468432-34468620)
chr3 (245-383)||(34509647-34509788)
chr3 (285-370)||(27629969-27630055)
chr3 (78-150)||(34509182-34509255)
chr3 (158-230)||(27623234-27623306)
chr3 (285-383)||(34522654-34522754)
chr3 (17-150)||(34468245-34468362)
chr3 (158-203)||(34509333-34509378)
chr3 (81-150)||(27623086-27623156)
chr3 (285-383)||(34488447-34488547)


Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Original strand, 27629467 - 27629962
Alignment:
Q  9 agcacagatcacacctctataagtcacttctggagtaattgttacctacgcaaccaagagtagaaatactagcaataagtataattaaaaggataaacag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629467 agcacagatcacacctctataagtcacttctggagtaattgttacctacgcaaccaagagtagaaatactagcaataagtataattaaaaggataaacag 27629566  T
Q  109 taagtaattatacaaattattgaaagtggaacttacatcatagctgccctttccaaggagaaggggaaacctcagtgatgatttactttgtggagaagag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27629567 taagtaattatacaaattattgaaagtggaacttacatcatagctgccctttccaaggagaaggggaaacctcaatgatgatttactttgtggagaagag 27629666  T
Q  209 acatgcgtctcttaagaatgaaatgccatttgtcctagatcctgttcaacttcagacacctctggtggctgggaaaatgaacttgcctcagattggggag 308  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27629667 acatgcgtctcttaagaatgaaatgccatttgtcctagattctgttcaacttcagacacctctggtggctgggaaaatgaacttgcctcagattggggag 27629766  T
Q  309 aggtggaggagacacgaaaacttcataggctgtagatggaacttaggttgcttgatgcagctcggtgctggttacatcagtcttccaccatttggagaaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  27629767 aggtggaggagacacgaaaacttcataggctgtagatggaacttaggttgcttgatccagctcggtgctggttacatcagtcttccaccatatggagaaa 27629866  T
Q  409 ctacaacatggccaccgccagcacctgcacc--atattggtgctggaggtggccaagacttagttccttcatatgacagcccaccgaggtaaccac 502  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27629867 ctacaacatggccaccgccagcacctgcaccatatattgatgctggaggtggccaagacttagttccttcatatggcagcccaccgaggtaaccac 27629962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 147 - 502
Target Start/End: Original strand, 34488099 - 34488454
Alignment:
Q  147 catagctgccctttccaaggagaaggggaaacctcagtgatgatttactttgtggagaagagacatgcgtctcttaagaatgaaatgccatttgtcctag 246  Q
    ||||||||||||||||||| ||||||||||||||| || | ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34488099 catagctgccctttccaagaagaaggggaaacctcggtaaagatttacgttgtggagaagaggcatgcgtctcttaagaatgaaatgtcatttgtcctag 34488198  T
Q  247 atcctgttcaacttcagacacctctggtggctgggaaaatgaacttgcctcagattggggagaggtggaggagacacgaaaacttcataggctgtagatg 346  Q
    || || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34488199 attctattcaacttcagtcacctctggtggctggtaaaatgaacttgcctcagattggggagaggtggaggagacacgaaaacttgataggctgtagatg 34488298  T
Q  347 gaacttaggttgcttgatgcagctcggtgctggttacatcagtcttccaccatttggagaaactacaacatggccaccgccagcacctgcaccatattgg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||| || |||||||||||||||| ||| |||||||||||||||||||| |    
T  34488299 gaacttaggttgcttgatgcagctcggtgctggttacatcagtctgccgccatatgaagaaactacaacatggacacagccagcacctgcaccatattag 34488398  T
Q  447 tgctggaggtggccaagacttagttccttcatatgacagcccaccgaggtaaccac 502  Q
    ||||||||||||||||| | ||||||||||||||| | ||||||| ||||||||||    
T  34488399 tgctggaggtggccaaggcgtagttccttcatatggcggcccaccaaggtaaccac 34488454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 147 - 502
Target Start/End: Original strand, 34522305 - 34522661
Alignment:
Q  147 catagctgccctttccaaggagaaggggaaacctca-gtgatgatttactttgtggagaagagacatgcgtctcttaagaatgaaatgccatttgtccta 245  Q
    ||||||| |||||||||||||||||  ||||||  | |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  34522305 catagctcccctttccaaggagaagaagaaacccaaagtgatgatttactttgtggagaagaggcatgcgtctcttaagaatgaaatgtcatttgtccta 34522404  T
Q  246 gatcctgttcaacttcagacacctctggtggctgggaaaatgaacttgcctcagattggggagaggtggaggagacacgaaaacttcataggctgtagat 345  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  34522405 gatcttgttcaacttcagacacctctggtagttgggaaaatgaacttgcctcagattggggagaggtgaaggagacacgaaaacttgataggatgtagat 34522504  T
Q  346 ggaacttaggttgcttgatgcagctcggtgctggttacatcagtcttccaccatttggagaaactacaacatggccaccgccagcacctgcaccatattg 445  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  34522505 ggaactgaggttgcttgatgcagctcggtgctggttacatcagtctgccaccatatgaagaaactacaacatggccaccgccagcacctgcaccatattg 34522604  T
Q  446 gtgctggaggtggccaagacttagttccttcatatgacagcccaccgaggtaaccac 502  Q
    ||| |||||||||||||||| ||||||||||||||| | ||||| | ||||||||||    
T  34522605 gtgttggaggtggccaagacgtagttccttcatatggcggcccatcaaggtaaccac 34522661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 34522102 - 34522235
Alignment:
Q  17 tcacacctctataagtcacttctggagtaattgttacctacgcaaccaagagtagaaatactagcaataagtataattaaaaggataaacagtaagtaat 116  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34522102 tcacacctctagacgtctcttctggagtaattgttacctacgcaaccaagagcagaaatactagcaataagtataattaaaaggataaacagtaagtaat 34522201  T
Q  117 tatacaaattattgaaagtggaacttacatcata 150  Q
    ||||||||| ||||||||||||||||||||||||    
T  34522202 tatacaaatcattgaaagtggaacttacatcata 34522235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 34487896 - 34488029
Alignment:
Q  17 tcacacctctataagtcacttctggagtaattgttacctacgcaaccaagagtagaaatactagcaataagtataattaaaaggataaacagtaagtaat 116  Q
    ||||||||||| ||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34487896 tcacacctctagaagtcgcttatggagtaattgttacctacacaaccaagagaagaaatactagcaataagtataattaaaaggataaacagtaagtaat 34487995  T
Q  117 tatacaaattattgaaagtggaacttacatcata 150  Q
    ||||||||| ||||||||||||||||||||||||    
T  34487996 tatacaaatcattgaaagtggaacttacatcata 34488029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 147 - 337
Target Start/End: Original strand, 34468432 - 34468620
Alignment:
Q  147 catagctgccctttccaaggagaaggggaaacctcagtgatgatttactttgtggagaagagacatgcgtctcttaagaatgaaatgccatttgtcctag 246  Q
    ||||||| ||||||||   | ||| ||||||| || | ||||||||||||||||||| || |  ||| |||||   ||||||||||| ||||||||| ||    
T  34468432 catagctcccctttccggagcgaaagggaaacgtcggcgatgatttactttgtggaggaggggaatgagtctcc--agaatgaaatgtcatttgtcccag 34468529  T
Q  247 atcctgttcaacttcagacacctctggtggctgggaaaatgaacttgcctcagattggggag-aggtggaggagacacgaaaacttcatagg 337  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||    
T  34468530 atcctgttcaacttcagacacctcttgtggctggg-aaatgaacttgcctcagattggggagcaggtggaggagacaccaaatcttgatagg 34468620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 383
Target Start/End: Original strand, 34509647 - 34509788
Alignment:
Q  245 agatcctgttcaacttcagacacctc-tggtggctgggaaaatgaacttgcctcagattggggaga-ggtggaggagacacgaaaacttcataggctgta 342  Q
    ||||| |||| |||||||||||| || |||||  |||||| | || ||||||| ||||||| |||| |||||||||||||| ||||||| || || ||||    
T  34509647 agatcttgttaaacttcagacacttcatggtgaatgggaagacgagcttgcctaagattggagagaaggtggaggagacaccaaaacttgatcgggtgta 34509746  T
Q  343 gatggaacttaggttgcttgatgcagctcgg-tgctggttac 383  Q
    ||||||||| |||| ||||| |||||||||| ||||||||||    
T  34509747 gatggaactgaggtagcttggtgcagctcggatgctggttac 34509788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 27630055 - 27629969
Alignment:
Q  285 atgaacttgcctcagattggggag-aggtggaggagacacgaaaacttcataggctgtagatggaacttaggttgcttgatgcagct 370  Q
    ||||||||| ||| |||||| ||| ||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||    
T  27630055 atgaacttgtctcggattggagagcaggtggaggagacacgaaaactggttagggtgcagatggaacttaggttgcttgatgcagct 27629969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 34509182 - 34509255
Alignment:
Q  78 tagcaataagtataattaaaaggataaacagtaagtaatta-tacaaattattgaaagtggaacttacatcata 150  Q
    ||||||| ||||||| || ||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||    
T  34509182 tagcaattagtataaatataaggataaaaagtaagaaattactacaaatcattgaaagtggaacttacatcata 34509255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 27623234 - 27623306
Alignment:
Q  158 tttccaaggagaaggggaaacctcagtgatgatttactttgtggagaagagacatgcgtctcttaagaatgaa 230  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| || | |||| ||| | ||||||||||    
T  27623234 tttccaaggataaggggaaaccttagtgatgatttactttgtggaggaggggcatgagtcccctaagaatgaa 27623306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 383
Target Start/End: Complemental strand, 34522754 - 34522654
Alignment:
Q  285 atgaacttgcctcagattggggag-aggtggaggagacacgaaaacttcataggctgtagatggaacttaggttgcttgatgcagctc-ggtgctggtta 382  Q
    ||||||||| ||| || ||||||| ||||||||||||||||||||||   ||||  | ||||| |||||||||||||||||||||||| |||| ||||||    
T  34522754 atgaacttgtctcggaatggggagcaggtggaggagacacgaaaactggttagggggcagatgaaacttaggttgcttgatgcagctcaggtggtggtta 34522655  T
Q  383 c 383  Q
    |    
T  34522654 c 34522654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 34468245 - 34468362
Alignment:
Q  17 tcacacctctataagtcacttctggagtaattgttacctacgcaaccaagagtagaaatactagcaataagtataattaaaaggataaacagtaagtaat 116  Q
    ||||||||||| ||||| ||||||||||||  ||||||||||| |||||||| ||            ||||||||||||||||||||||     ||||||    
T  34468245 tcacacctctagaagtcgcttctggagtaacggttacctacgcgaccaagagcag------------taagtataattaaaaggataaa----gagtaat 34468328  T
Q  117 tatacaaattattgaaagtggaacttacatcata 150  Q
    ||||||||| ||| ||||||||||||||||||||    
T  34468329 tatacaaatcattcaaagtggaacttacatcata 34468362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 34509333 - 34509378
Alignment:
Q  158 tttccaaggagaaggggaaacctcagtgatgatttactttgtggag 203  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||    
T  34509333 tttccagggagaaggggaaaccttagtgatgatttactttgtggag 34509378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 27623086 - 27623156
Alignment:
Q  81 caataagtataattaaaaggataaacagtaagtaatta-tacaaattattgaaagtggaacttacatcata 150  Q
    |||| ||||||| || ||||||||| ||| || ||||| ||||||| ||||||||||||||||||||||||    
T  27623086 caattagtataaatataaggataaatagtcagaaattactacaaatcattgaaagtggaacttacatcata 27623156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 383
Target Start/End: Complemental strand, 34488547 - 34488447
Alignment:
Q  285 atgaacttgcctcagattggggag-aggtggaggagacacgaaaacttcataggctgtagatggaacttaggttgcttgatgcagctc-ggtgctggtta 382  Q
    ||||||||| ||| || ||||||| |||| |||||||||| ||||||   |||| || |||||||| || |||||||||||||||||| |||| ||||||    
T  34488547 atgaacttgtctcggaatggggagcaggtagaggagacacaaaaactggttagggtgcagatggaattttggttgcttgatgcagctcaggtggtggtta 34488448  T
Q  383 c 383  Q
    |    
T  34488447 c 34488447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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