View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_11 (Length: 514)

Name: NF0831_low_11
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_11
NF0831_low_11
[»] chr5 (3 HSPs)
chr5 (97-501)||(34423880-34424306)
chr5 (108-271)||(22033626-22033789)
chr5 (329-493)||(22031260-22031424)
[»] chr2 (12 HSPs)
chr2 (112-499)||(37325511-37325897)
chr2 (145-495)||(34116904-34117254)
chr2 (108-396)||(37108301-37108590)
chr2 (142-277)||(32487727-32487862)
chr2 (150-266)||(5539464-5539580)
chr2 (151-277)||(37983956-37984082)
chr2 (184-222)||(34353020-34353058)
chr2 (186-266)||(3156201-3156281)
chr2 (189-280)||(18697219-18697310)
chr2 (196-233)||(4276916-4276953)
chr2 (97-137)||(34116126-34116166)
chr2 (165-265)||(37599041-37599141)
[»] chr4 (8 HSPs)
chr4 (97-499)||(12833037-12833439)
chr4 (106-441)||(54845781-54846116)
chr4 (110-487)||(48104564-48104940)
chr4 (457-501)||(54824912-54824956)
chr4 (160-234)||(55431893-55431967)
chr4 (116-261)||(18991597-18991742)
chr4 (189-265)||(7704959-7705035)
chr4 (151-219)||(52582729-52582797)
[»] chr6 (5 HSPs)
chr6 (108-277)||(19248988-19249157)
chr6 (343-493)||(19248771-19248921)
chr6 (151-277)||(14392677-14392803)
chr6 (189-280)||(32159777-32159868)
chr6 (150-218)||(28591025-28591093)
[»] chr3 (4 HSPs)
chr3 (108-278)||(18378057-18378227)
chr3 (189-280)||(12950108-12950199)
chr3 (152-280)||(36730898-36731026)
chr3 (151-227)||(33335375-33335451)
[»] chr1 (2 HSPs)
chr1 (189-280)||(11649145-11649236)
chr1 (116-241)||(16587164-16587289)
[»] chr8 (2 HSPs)
chr8 (153-403)||(40219406-40219656)
chr8 (457-501)||(19297871-19297915)
[»] scaffold0094 (1 HSPs)
scaffold0094 (160-261)||(23721-23822)
[»] chr7 (3 HSPs)
chr7 (141-217)||(13760535-13760611)
chr7 (194-263)||(26159302-26159371)
chr7 (192-281)||(31395801-31395890)
[»] scaffold1185 (1 HSPs)
scaffold1185 (112-217)||(1644-1749)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 97 - 501
Target Start/End: Original strand, 34423880 - 34424306
Alignment:
Q  97 agggctactctgtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  34423880 agggctactctgtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggatgacgatgtctggcaaaaacatattccttc 34423979  T
Q  197 aaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgt 296  Q
    |||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34423980 aaaggtgtctctgtttgtgtggcgtcttcttcgcaacagacttcccacaaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgt 34424079  T
Q  297 atctcaggctgcgaggagttggaaacagcaaaacatctctttttatattgtgacattttt----------------------ggctctctttggtctcat 374  Q
    ||||||||||| | |||||||||||| | ||||||||| |||||||||||||||||||||                      |||||||| || ||||||    
T  34424080 atctcaggctgtggggagttggaaacgggaaaacatctttttttatattgtgacatttttggctctctttggtctcatatttggctctctctgttctcat 34424179  T
Q  375 atttggcgttggttacatatttgttcggttatgcctcatgatatcagacaacatttcattcattttactaccttggagggcttgcctagatttactcatt 474  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34424180 atttggcgctggttacatatttgttcagttatgcctcatgatatcagacaacatttcattcattttactaccttggagggtttgcctagatttactcatt 34424279  T
Q  475 ctttcttgaaaattatttgatgtgcct 501  Q
    ||||||||||||||||||| |||||||    
T  34424280 ctttcttgaaaattatttggtgtgcct 34424306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 108 - 271
Target Start/End: Complemental strand, 22033789 - 22033626
Alignment:
Q  108 gtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctc 207  Q
    ||||||||||| |||| ||||||||||||| ||||  | ||  ||||||||||| ||||||||||||||||  ||||  |||||||||||||||||||||    
T  22033789 gtgaggggagcttatcactttctcactacctctggacagccagtggataggactatggttgacgatgtctggtaaaagaatattccttcaaaggtgtctc 22033690  T
Q  208 tgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgt 271  Q
    |||| |||||| |||||||| |||||| ||||  ||||||||| |||||| ||| ||| |||||    
T  22033689 tgttcgtgtggcgtcttcttcgcaacagacttatcacaaaagacaatttgatgcagcgacatgt 22033626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 493
Target Start/End: Complemental strand, 22031424 - 22031260
Alignment:
Q  329 acatctctttttatattgtgacatttttggctctctttggtctcatatttggcgttggttacatatttgttcggttatgcctcatgatatcagacaacat 428  Q
    |||||| |||||| |||| |||| ||| | |||||||||||||||| |  ||||||||||||| ||||  |||||  | |||  ||| |||||||||| |    
T  22031424 acatctgtttttacattgcgacactttcgactctctttggtctcatgtgcggcgttggttacaaatttcgtcggtcttacctggtgacatcagacaactt 22031325  T
Q  429 ttcattcattttactaccttggagggcttgcctagatttactcattctttcttgaaaattatttg 493  Q
    |||||||| |||||     ||| ||| |||||||||||||||||||| |||||||||||||||||    
T  22031324 ttcattcaatttacatatatggcggggttgcctagatttactcattcattcttgaaaattatttg 22031260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 112 - 499
Target Start/End: Complemental strand, 37325897 - 37325511
Alignment:
Q  112 ggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtt 211  Q
    ||||||||||| | || ||||||||| |||| ||  ||||| |||||||||||||| |||||||||  | |||||||||||| |||||||||||||||||    
T  37325897 ggggagcatattgtttcctcactacctctggagatgctttg-ataggactctggtttacgatgtctagccaaaacatattccctcaaaggtgtctctgtt 37325799  T
Q  212 tgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgtatctcaggctgcgag 311  Q
     |||||| ||||||||  ||||||| |||| |||||||| ||||||| |||||||||||| |||| |||| |||||| |||||| || ||||| || |      
T  37325798 cgtgtggcgtcttcttcacaacaaaattccaacaaaagacaatttggagcggcggcatgttcttcttcatactgacaaggcttgcatttcaggttgtgga 37325699  T
Q  312 gagttggaaacagcaaaacatctctttttatattgtgacatttttggctctctttggtctcatatttggcgttggttacatatttgttcggttatgcctc 411  Q
    ||| ||||| |||| |||||||| || |||| |||||| |||||||| ||||||||||||||||||||| ||||||||   |||| |||||| ||||||     
T  37325698 gaggtggaatcagctaaacatcttttcttattttgtgatatttttggttctctttggtctcatatttggtgttggttaagcatttcttcggtgatgcctt 37325599  T
Q  412 atgatatcagacaacatttcattcattttactaccttggagggcttgcctagatttactcattctttcttgaaaattatttgatgtgc 499  Q
     ||| ||||||||||| || ||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||| || |||||    
T  37325598 gtgacatcagacaacactttattcattttactgacatggcgggcttgcctagatttactcattctttcttgaaaattatatggtgtgc 37325511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 145 - 495
Target Start/End: Original strand, 34116904 - 34117254
Alignment:
Q  145 aacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccac 244  Q
    |||| |||||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||    
T  34116904 aaccattggataggactctagtcgacgatgtctgacaaaagaatattccttcaaaggtgtctctgtttgtgtggtaccttcttcgcaacagacttcccac 34117003  T
Q  245 aaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgtatctcaggctgcgaggagttggaaacagcaaaacatctctttttatat 344  Q
    ||| || ||| || ||| |||||||||  |||  ||  || ||||| ||||||| || || || |  || | ||||||||||| ||| || |||||| ||    
T  34117004 aaaggacaatatgttgcagcggcatgtaattccccaaactcacacgacttgtatttcggggtgtggcgattcggaaacagcaacacacctatttttacat 34117103  T
Q  345 tgtgacatttttggctctctttggtctcatatttggcgttggttacatatttgttcggttatgcctcatgatatcagacaacatttcattcattttacta 444  Q
    ||||| |||||||| ||||||||||||||| |||||||||||||||| ||||  | || | | |||  | | ||||| |||  ||||||||| ||||||     
T  34117104 tgtgatatttttggttctctttggtctcatgtttggcgttggttacaaatttcgttggatttacctgctaacatcaggcaatttttcattcaatttactt 34117203  T
Q  445 ccttggagggcttgcctagatttactcattctttcttgaaaattatttgat 495  Q
       ||| ||||||||| |||||||||||||| ||||||||||| |||||||    
T  34117204 atatggcgggcttgcccagatttactcattcattcttgaaaatcatttgat 34117254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 396
Target Start/End: Complemental strand, 37108590 - 37108301
Alignment:
Q  108 gtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctc 207  Q
    |||| |||||||||||||||||| || ||  | | ||| | ||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||    
T  37108590 gtgaagggagcatatcgctttcttaccacatccgatgatcgtttggataggactctggttgatgatgtctggcaaaagcatattccgtcaaaggtgtctc 37108491  T
Q  208 tgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcgg-catgtccttcatcattctgacacggcttgtatctcaggct 306  Q
    |||| || ||| | |||||  |||| | |||||| ||||||||||||||||| ||| ||  ||||| || | | |   || |||||||| || ||||| |    
T  37108490 tgttcgtttggcggcttctccgcaatagacttcctacaaaagataatttggtacggtggtaatgtcatttaacctatagatacggcttgcatttcaggtt 37108391  T
Q  307 gcgaggagttggaaacagcaaaacatctctttttatattgtgacatttttggctctctttggtctcatatttggcgttggttacatattt 396  Q
    | |  |  |||||||| |||| |||||| || ||||||||||| || ||   ||||||||||||| || |||| ||||||||||||||||    
T  37108390 gtggaggtttggaaacggcaacacatctgttcttatattgtgatatattcatctctctttggtcttatgtttgacgttggttacatattt 37108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 32487862 - 32487727
Alignment:
Q  142 gtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcc 241  Q
    ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||| ||||||||||||||||||| || ||| |||||||||||      
T  32487862 gtgaaccattggataggactcttgttgacgacgtctggcataagcatattccttcaaagttgtctctgtttgtgtggtgcctccttcgcaacaaactttt 32487763  T
Q  242 cacaaaagataatttggtgcggcggcatgtccttca 277  Q
     || ||||| ||||||| |||||||  |||||||||    
T  32487762 tactaaagacaatttggcgcggcggagtgtccttca 32487727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 5539464 - 5539580
Alignment:
Q  150 ttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaag 249  Q
    ||||||| |||||| ||||||||  |||| || || ||||||||||||||||||||||||||||||||| | || ||  |||||| |||||| || ||||    
T  5539464 ttggatatgactcttgttgacgacatctggcataagcatattccttcaaaggtgtctctgtttgtgtggcgcctcctacgcaacagacttcctactaaag 5539563  T
Q  250 ataatttggtgcggcgg 266  Q
    | |||||||||||||||    
T  5539564 acaatttggtgcggcgg 5539580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 37984082 - 37983956
Alignment:
Q  151 tggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaaga 250  Q
    ||||||| | ||| |||||||| |||||||| || ||||||| ||||||||||||||| ||||||||| | || ||| | |||  |||||| || |||||    
T  37984082 tggatagaattcttgttgacgacgtctgacataagcatattctttcaaaggtgtctctatttgtgtggcgcctacttcgaaactgacttcctactaaaga 37983983  T
Q  251 taatttggtgcggcggcatgtccttca 277  Q
     |||||||||||||||| |||||||||    
T  37983982 caatttggtgcggcggcgtgtccttca 37983956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 34353058 - 34353020
Alignment:
Q  184 aacatattccttcaaaggtgtctctgtttgtgtggtgtc 222  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  34353058 aacatattccttcaaaggtgtttctgtttgtgtggtgtc 34353020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 3156201 - 3156281
Alignment:
Q  186 catattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcgg 266  Q
    ||||||||||||||||| ||||||||||||||| | || ||| |||| | |||||| || | ||| |||||||||| ||||    
T  3156201 catattccttcaaaggtatctctgtttgtgtggcgcctccttcgcaatagacttcctactagagacaatttggtgcagcgg 3156281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 18697310 - 18697219
Alignment:
Q  189 attccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatca 280  Q
    |||||||||||||||||| ||||| ||||| | |||||| |||| | | |||| |||||||| |  ||||||| ||||| |||| |||||||    
T  18697310 attccttcaaaggtgtctttgtttctgtggcgccttcttcgcaatagaattccaacaaaagacagcttggtgcagcggcgtgtcattcatca 18697219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 4276916 - 4276953
Alignment:
Q  196 caaaggtgtctctgtttgtgtggtgtcttcttggcaac 233  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  4276916 caaaggtgtctctgtttgtgtggcgtcttctttgcaac 4276953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 34116126 - 34116166
Alignment:
Q  97 agggctactctgtgaggggagcatatcgctttctcactacc 137  Q
    |||| ||||| ||||||||||||||||||||||||| ||||    
T  34116126 agggttactcggtgaggggagcatatcgctttctcattacc 34116166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 37599041 - 37599141
Alignment:
Q  165 gttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggc 264  Q
    ||||||||| | ||||| || || ||||| ||||||||||||||| | || ||| | |||||| || ||| ||||||||| ||||| || |||||| |||    
T  37599041 gttgacgatatttgacataagcaaattccctcaaaggtgtctctgatggtttggcgccttcttcgcgacagacttcccactaaagacaacttggtgaggc 37599140  T
Q  265 g 265  Q
    |    
T  37599141 g 37599141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 97 - 499
Target Start/End: Original strand, 12833037 - 12833439
Alignment:
Q  97 agggctactctgtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttc 196  Q
    |||||||  ||||| ||| ||||||| |||| |||||||||  ||| ||  ||||||||||||||||||||||||||||||| |||||||| ||||| |     
T  12833037 agggctatactgtgcgggaagcatattgcttcctcactacctttggagatgctttggataggactctggttgacgatgtctggcaaaaacaaattccctt 12833136  T
Q  197 aaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgt 296  Q
    ||||||||||||||| |||||| |||||||| |||||| | ||||  ||||||| ||||||| ||| || ||||| |||| |||| |||||||||||||     
T  12833137 aaaggtgtctctgttcgtgtggcgtcttcttcgcaacagaattccatcaaaagacaatttggagcgacgtcatgttcttcttcatactgacacggcttgc 12833236  T
Q  297 atctcaggctgcgaggagttggaaacagcaaaacatctctttttatattgtgacatttttggctctctttggtctcatatttggcgttggttacatattt 396  Q
    || ||||| || |  ||| ||||| | || |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||    
T  12833237 atttcaggttgtggagaggtggaatcggctaaacatcttttcttatattgtgatatttttggctctctttggtctcatatttggcgttggttaagcattt 12833336  T
Q  397 gttcggttatgcctcatgatatcagacaacatttcattcattttactaccttggagggcttgcctagatttactcattctttcttgaaaattatttgatg 496  Q
     |||||| ||||||  ||| |||| |||||| || ||||||||||||  | ||| | |||||||||||||| |||||||||||||||||||||| || ||    
T  12833337 cttcggtgatgccttgtgacatcatacaacactttattcattttactcacatggcgagcttgcctagatttcctcattctttcttgaaaattatatggtg 12833436  T
Q  497 tgc 499  Q
    |||    
T  12833437 tgc 12833439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 106 - 441
Target Start/End: Complemental strand, 54846116 - 54845781
Alignment:
Q  106 ctgtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtc 205  Q
    ||||| |||||||||||||||||||||||||| |||| ||  ||||||||| ||||||||||||||||||||| |||||||||||||| | |||||||||    
T  54846116 ctgtgcggggagcatatcgctttctcactacctctggagatgctttggatatgactctggttgacgatgtctggcaaaaacatattcccttaaaggtgtc 54846017  T
Q  206 tctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgtatctcaggc 305  Q
    | ||||||||||| |||||||| |||||| | | || |||||||| ||||||| ||| || | |||  ||| || |  |||||||||||| || |||||     
T  54846016 tttgtttgtgtggcgtcttcttcgcaacagaatcccaacaaaagacaatttggagcgacgacgtgttattcttcctattgacacggcttgcatttcaggt 54845917  T
Q  306 tgcgaggagttggaaacagcaaaacatctctttttatattgtgacatttttggctctctttggtctcatatttggcgttggttacatatttgttcggtta 405  Q
    || |  ||| ||||||| || |||||||| || |||||||||| ||| ||||||||||||| |||||||||||||||||||||| | |||| ||| ||||    
T  54845916 tgtggagaggtggaaacggctaaacatcttttcttatattgtgtcatatttggctctctttagtctcatatttggcgttggttaaacatttcttcagtta 54845817  T
Q  406 tgcctcatgatatcagacaacatttcattcatttta 441  Q
    ||||   ||| |||||||||||||| ||||||||||    
T  54845816 tgccgtctgacatcagacaacattttattcatttta 54845781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 110 - 487
Target Start/End: Complemental strand, 48104940 - 48104564
Alignment:
Q  110 gaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctg 209  Q
    ||||||| |||||||||||||||||| | ||||  |||| |||||||||| ||  |||||||||||||| |||||  |||||||||||||||||||| ||    
T  48104940 gaggggaacatatcgctttctcactatctctggacaaccattggataggaatcaagttgacgatgtctggcaaaagaatattccttcaaaggtgtctatg 48104841  T
Q  210 tttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatcattctgacacggcttgtatctcaggctgcg 309  Q
    || |||||| ||||  ||  ||| | ||||||||| || | ||||||  ||| ||| ||||| ||||| ||  || |||||||||| || || || || |    
T  48104840 ttcgtgtggcgtctctttcacaatagacttcccacgaaggttaatttaatgcagcgacatgttcttcaacaaactcacacggcttgcatttcggg-tgtg 48104742  T
Q  310 aggagttggaaacagcaaaacatctctttttatattgtgacatttttggctctctttggtctcatatttggcgttggttacatatttgttcggttatgcc 409  Q
      || | |||||| |||| |||||| |||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||  | |||| | ||    
T  48104741 gcgattcggaaacggcaacacatctgtttttacattgtgatatttttggctctctttggtctcatgttttgcgttggttacatcttttgttggttttacc 48104642  T
Q  410 tcatgatatcagacaacatttcattcattttactaccttggagggcttgcctagatttactcattctttcttgaaaat 487  Q
    |  ||| || ||||||  ||||||||| |||||| |  ||| ||| | ||| ||||||||||||||||| ||| ||||    
T  48104641 tgctgacataagacaatttttcattcaatttacttctatggcgggttcgccaagatttactcattcttttttgcaaat 48104564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 501
Target Start/End: Complemental strand, 54824956 - 54824912
Alignment:
Q  457 tgcctagatttactcattctttcttgaaaattatttgatgtgcct 501  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||    
T  54824956 tgcctagatttactcatttattcttgaaaattatttggtgtgcct 54824912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 55431893 - 55431967
Alignment:
Q  160 ctctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaaca 234  Q
    |||| ||||| ||||| || || |||||||| ||||||||||||||| |||| |||||| |||| ||| ||||||    
T  55431893 ctctagttgatgatgtgtggcataaacatatcccttcaaaggtgtctttgttggtgtggcgtctccttcgcaaca 55431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 18991597 - 18991742
Alignment:
Q  116 agcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtg 215  Q
    ||||||||||| | | ||||  || |||||| | || ||||| ||||| || || ||||| ||||| || ||||| ||||| |||||||||||||| |||    
T  18991597 agcatatcgctatattactattacaggtgaaacattagatagaactcttgtcgatgatgtttgacataagcatatcccttctaaggtgtctctgttggtg 18991696  T
Q  216 tggtgtcttcttggcaacaaacttcccacaaaagataatttggtgc 261  Q
    ||||| || ||| | || | |||||| || ||||| || |||||||    
T  18991697 tggtgcctccttcgtaatagacttcctactaaagacaacttggtgc 18991742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 7705035 - 7704959
Alignment:
Q  189 attccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcg 265  Q
    |||||||||||||||||| |||| || ||| | |||||| |||||| ||| || ||||| |||||| |||| |||||    
T  7705035 attccttcaaaggtgtctgtgttcgtttggcgccttcttcgcaacagactcccaacaaaggataatctggttcggcg 7704959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 52582729 - 52582797
Alignment:
Q  151 tggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggt 219  Q
    ||||||| ||||| ||||| |||||||| || | ||| |||||  |||| |||||||||||||||||||    
T  52582729 tggatagaactcttgttgatgatgtctggcatagacacattccaacaaaagtgtctctgtttgtgtggt 52582797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 277
Target Start/End: Complemental strand, 19249157 - 19248988
Alignment:
Q  108 gtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctc 207  Q
    |||||||||||||||||||||||||||| | |||   | || |||||||||| || ||||||||||||||  |||||  |||||||||||||||||||||    
T  19249157 gtgaggggagcatatcgctttctcactatctctgaacagccattggataggaatcaggttgacgatgtctatcaaaagaatattccttcaaaggtgtctc 19249058  T
Q  208 tgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttca 277  Q
    |||| |||||| |||| ||| |||||| |||||||| ||| | ||||||| ||| ||| ||||| |||||    
T  19249057 tgttcgtgtggcgtctccttcgcaacagacttcccataaaggttaatttgatgcagcgacatgttcttca 19248988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 343 - 493
Target Start/End: Complemental strand, 19248921 - 19248771
Alignment:
Q  343 attgtgacatttttggctctctttggtctcatatttggcgttggttacatatttgttcggttatgcctcatgatatcagacaacatttcattcattttac 442  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||  | |||| | |||  ||| |||||||||  ||||||||| |||||    
T  19248921 attgtgatatttttggctctctttggtctcatgtttggcgttggttacatatttcgttggttttacctgctgacatcagacaatttttcattcaatttac 19248822  T
Q  443 taccttggagggcttgcctagatttactcattctttcttgaaaattatttg 493  Q
    | |  ||||||| || || ||||||||||||||||| |||||||| |||||    
T  19248821 ttctatggagggtttaccaagatttactcattcttttttgaaaatcatttg 19248771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 14392803 - 14392677
Alignment:
Q  151 tggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaaga 250  Q
    ||||||||||||| |||||| | |||||||| ||  |||||||||||||||||||||||||||||||||| || ||| | |||| || ||| || |||||    
T  14392803 tggataggactcttgttgacaacgtctgacataagtatattccttcaaaggtgtctctgtttgtgtggtgcctccttcgaaacagacatcctactaaaga 14392704  T
Q  251 taatttggtgcggcggcatgtccttca 277  Q
     ||||||||| ||||||||||||||||    
T  14392703 caatttggtgtggcggcatgtccttca 14392677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 32159777 - 32159868
Alignment:
Q  189 attccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatca 280  Q
    ||||||||| |||||||| |||||||||||   |||||| |||| | |||| | |||||||| || ||||||||||| ||||||| ||||||    
T  32159777 attccttcataggtgtctttgtttgtgtggcaccttcttcgcaatagactttcaacaaaagacaacttggtgcggcgacatgtccgtcatca 32159868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 28591025 - 28591093
Alignment:
Q  150 ttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtgg 218  Q
    ||||||| |||||| ||||||||||| || ||  || |||||  |||||||||||||||||||||||||    
T  28591025 ttggatatgactcttgttgacgatgtttggcatcaatatattatttcaaaggtgtctctgtttgtgtgg 28591093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 108 - 278
Target Start/End: Complemental strand, 18378227 - 18378057
Alignment:
Q  108 gtgaggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctc 207  Q
    |||||||||||||||||||| ||||||||  ||||||| ||| ||||||||||||| |||||| | ||||| || ||  | ||||| |||||||||||||    
T  18378227 gtgaggggagcatatcgcttcctcactacttctggtgagcctgtggataggactcttgttgacaacgtctggcataagaaaattccatcaaaggtgtctc 18378128  T
Q  208 tgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcat 278  Q
    ||||||| ||| | |||||| |||||| |||||  ||||| || | | |||||||||||||||| ||||||    
T  18378127 tgtttgtatggcgccttcttcgcaacagacttctaacaaaggacattctggtgcggcggcatgttcttcat 18378057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 12950199 - 12950108
Alignment:
Q  189 attccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatca 280  Q
    ||||||| |||||||||| ||| ||||||| | |||||| |||| | |||||| |||||||| || ||||||||||||| ||| ||||||||    
T  12950199 attcctttaaaggtgtctttgtgtgtgtggcgccttcttcgcaatagacttccaacaaaagacaacttggtgcggcggcgtgttcttcatca 12950108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 36731026 - 36730898
Alignment:
Q  152 ggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagat 251  Q
    |||| ||| ||| ||||||||  |||| || ||| | |||||||||||||||||| ||||| ||||| | |||||| |||| | | |||| ||||||||     
T  36731026 ggatgggaatcttgttgacgacatctggcataaaaacattccttcaaaggtgtctttgtttatgtggcgccttcttcgcaatagaattccaacaaaagac 36730927  T
Q  252 aatttggtgcggcggcatgtccttcatca 280  Q
    || |||||||| |||| |||| |||||||    
T  36730926 aacttggtgcgacggcgtgtcattcatca 36730898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 33335451 - 33335375
Alignment:
Q  151 tggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttctt 227  Q
    |||||| |||||| |||||||| || || || |||||| ||||||||||||||||||| || |||||| | ||||||    
T  33335451 tggataagactcttgttgacgacgtttggcataaacatgttccttcaaaggtgtctctattggtgtggcgccttctt 33335375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 11649236 - 11649145
Alignment:
Q  189 attccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatca 280  Q
    |||||||||||||||||| ||| ||||||| |||||||| |||| | |||||| |||||||| || ||||||||||||| ||||||||||||    
T  11649236 attccttcaaaggtgtctttgtgtgtgtggcgtcttcttcgcaatagacttccaacaaaagacaacttggtgcggcggcttgtccttcatca 11649145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 16587164 - 16587289
Alignment:
Q  116 agcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtg 215  Q
    ||||||||||||||| |||| ||  |||||||   |||||| |||||| ||||| || ||||| || || |||||||| |||||||||||||||||||||    
T  16587164 agcatatcgctttcttactaacaacggtgaactagtggatatgactcttgttgatgacgtctggcataagcatattccatcaaaggtgtctctgtttgtg 16587263  T
Q  216 tggtgtcttcttggcaacaaacttcc 241  Q
    ||| | || ||| |||||| ||||||    
T  16587264 tggcgcctcctttgcaacagacttcc 16587289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 153 - 403
Target Start/End: Original strand, 40219406 - 40219656
Alignment:
Q  153 gataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagata 252  Q
    ||||||||| ||||||| ||| |||| |||| ||||||| | |||||||||||| |||| |||||| | |||||    || | |||||| || |||||||    
T  40219406 gataggactatggttgatgatatctggcaaagacatatttcatcaaaggtgtctgtgttcgtgtggcggcttctccataatagacttcctacgaaagata 40219505  T
Q  253 atttggtgcggcggcatgtccttcatcatt-ctgacacggcttgtatctcaggctgcgaggagttggaaacagcaaaacatctctttttatattgtgaca 351  Q
    |||||||||||||||| ||| |||  |||| | |||||   ||||||  |||| || |  | |||||||||  ||| |||| | || ||| |||||||||    
T  40219506 atttggtgcggcggcaagtcattc-ccattacagacacaatttgtattgcaggttgtggagggttggaaacgtcaacacatttgttcttacattgtgaca 40219604  T
Q  352 tttttggctctctttggtctcatatttggcgttggttacatatttgttcggt 403  Q
    |  |  |||||||||||| |||| ||||||| ||||||||||||| ||||||    
T  40219605 tactcagctctctttggtatcatgtttggcgctggttacatatttcttcggt 40219656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 501
Target Start/End: Original strand, 19297871 - 19297915
Alignment:
Q  457 tgcctagatttactcattctttcttgaaaattatttgatgtgcct 501  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||    
T  19297871 tgcctagatttactcatttattcttgaaaattatttggtgtgcct 19297915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 23721 - 23822
Alignment:
Q  160 ctctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggt 259  Q
    |||||||||| ||||| || || |||||||||||||||||||| ||||| ||||||||| | || ||| ||||||  ||||| |||||||| ||| ||||    
T  23721 ctctggttgatgatgtttggcataaacatattccttcaaaggtttctctatttgtgtggcgcctccttcgcaacaggcttcctacaaaagacaatctggt 23820  T
Q  260 gc 261  Q
    ||    
T  23821 gc 23822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 13760535 - 13760611
Alignment:
Q  141 ggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtttgtgtg 217  Q
    |||||| ||||||||| |||||| |||||||| ||||| || || ||||| |||||||||||||||||||| |||||    
T  13760535 ggtgaaactttggatatgactcttgttgacgacgtctggcataagcatatcccttcaaaggtgtctctgttggtgtg 13760611  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 26159302 - 26159371
Alignment:
Q  194 ttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcgg 263  Q
    ||||||||||||||||||||||||| |  ||||| | |||| |||||| || ||||||||||||||||||    
T  26159302 ttcaaaggtgtctctgtttgtgtggcgcgttcttcgtaacagacttcctactaaagataatttggtgcgg 26159371  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 31395890 - 31395801
Alignment:
Q  192 ccttcaaaggtgtctctgtttgtgtggtgtcttcttggcaacaaacttcccacaaaagataatttggtgcggcggcatgtccttcatcat 281  Q
    ||||||||||||| | ||||||||||| | |||||| |||| | | |||| |||||||| || ||||| || ||||  ||||||||||||    
T  31395890 ccttcaaaggtgtttttgtttgtgtggcgccttcttcgcaatagaattccaacaaaagacaacttggttcgacggcgcgtccttcatcat 31395801  T

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Target: scaffold1185 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 1644 - 1749
Alignment:
Q  112 ggggagcatatcgctttctcactaccactggtgaacctttggataggactctggttgacgatgtctgacaaaaacatattccttcaaaggtgtctctgtt 211  Q
    ||||||||||| ||||||| ||||  || | ||| ||  ||||||| ||||| |||||| | |||||||| ||  |||||||||||||||||||| ||||    
T  1644 ggggagcatattgctttcttactaataccgatgagccggtggatagtactcttgttgacaacgtctgacataagtatattccttcaaaggtgtctttgtt 1743  T
Q  212 tgtgtg 217  Q
    ||||||    
T  1744 tgtgtg 1749  T

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