View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_12 (Length: 513)

Name: NF0831_low_12
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_12
NF0831_low_12
[»] chr4 (19 HSPs)
chr4 (80-513)||(55724569-55725002)
chr4 (99-341)||(48312958-48313200)
chr4 (74-349)||(19733015-19733289)
chr4 (109-349)||(23641617-23641857)
chr4 (80-349)||(19756112-19756381)
chr4 (80-349)||(19783425-19783694)
chr4 (80-349)||(1827566-1827835)
chr4 (112-349)||(47419681-47419918)
chr4 (109-349)||(23647275-23647515)
chr4 (120-350)||(11586209-11586438)
chr4 (103-194)||(55299489-55299580)
chr4 (103-194)||(23872658-23872749)
chr4 (111-197)||(40688957-40689043)
chr4 (111-197)||(19162347-19162433)
chr4 (103-194)||(19648563-19648654)
chr4 (103-184)||(20675903-20675984)
chr4 (103-194)||(8935942-8936033)
chr4 (105-194)||(19115306-19115395)
chr4 (105-197)||(29552979-29553071)
[»] scaffold1350 (2 HSPs)
scaffold1350 (74-350)||(383-659)
scaffold1350 (348-509)||(689-850)
[»] chr3 (22 HSPs)
chr3 (80-349)||(16179785-16180054)
chr3 (82-349)||(19891524-19891791)
chr3 (80-349)||(48569049-48569318)
chr3 (74-349)||(962189-962464)
chr3 (95-349)||(17077324-17077577)
chr3 (109-349)||(2365152-2365392)
chr3 (112-349)||(34331841-34332078)
chr3 (80-259)||(12341371-12341550)
chr3 (95-349)||(19919255-19919509)
chr3 (356-501)||(12333930-12334075)
chr3 (367-501)||(19891841-19891974)
chr3 (276-349)||(15313222-15313295)
chr3 (261-349)||(12334114-12334202)
chr3 (359-462)||(15313338-15313441)
chr3 (359-453)||(17077188-17077282)
chr3 (103-184)||(6175668-6175749)
chr3 (74-175)||(22733671-22733772)
chr3 (108-197)||(25785883-25785972)
chr3 (117-198)||(10868526-10868607)
chr3 (109-197)||(8130847-8130935)
chr3 (121-197)||(11757683-11757759)
chr3 (103-179)||(42674634-42674710)
[»] chr6 (19 HSPs)
chr6 (80-349)||(17605360-17605629)
chr6 (80-349)||(21629148-21629417)
chr6 (97-349)||(13938580-13938832)
chr6 (97-349)||(18681600-18681852)
chr6 (82-350)||(15956008-15956269)
chr6 (80-349)||(17576743-17577012)
chr6 (136-349)||(24766450-24766663)
chr6 (112-349)||(2554482-2554718)
chr6 (356-501)||(17605176-17605321)
chr6 (356-495)||(21628970-21629109)
chr6 (356-462)||(17576598-17576704)
chr6 (97-194)||(26206195-26206292)
chr6 (367-450)||(2554768-2554851)
chr6 (103-194)||(15674700-15674791)
chr6 (103-194)||(33640785-33640876)
chr6 (109-198)||(12673296-12673385)
chr6 (367-482)||(15955844-15955959)
chr6 (124-182)||(18589224-18589282)
chr6 (117-197)||(13086425-13086505)
[»] chr5 (19 HSPs)
chr5 (80-341)||(33385007-33385268)
chr5 (80-341)||(27796329-27796589)
chr5 (80-349)||(25856465-25856734)
chr5 (104-349)||(33170527-33170772)
chr5 (97-349)||(28534702-28534954)
chr5 (164-350)||(27165120-27165305)
chr5 (109-349)||(42514594-42514834)
chr5 (97-349)||(30731340-30731592)
chr5 (97-349)||(23239245-23239495)
chr5 (356-501)||(33384815-33384960)
chr5 (115-225)||(8299333-8299443)
chr5 (356-462)||(25856320-25856426)
chr5 (356-450)||(27796636-27796730)
chr5 (111-197)||(36256651-36256737)
chr5 (100-197)||(30509201-30509298)
chr5 (100-197)||(30549544-30549641)
chr5 (109-197)||(1821342-1821431)
chr5 (359-501)||(27164937-27165079)
chr5 (105-194)||(22094430-22094519)
[»] chr8 (19 HSPs)
chr8 (80-341)||(13878521-13878782)
chr8 (80-349)||(20825145-20825414)
chr8 (95-350)||(10530520-10530775)
chr8 (97-349)||(41664394-41664646)
chr8 (110-349)||(32267429-32267668)
chr8 (97-349)||(8300665-8300917)
chr8 (99-349)||(9923465-9923715)
chr8 (109-349)||(7925260-7925500)
chr8 (80-206)||(17700325-17700451)
chr8 (356-465)||(13878365-13878474)
chr8 (356-462)||(20825453-20825559)
chr8 (74-175)||(5585780-5585881)
chr8 (103-194)||(16375284-16375375)
chr8 (367-450)||(41664261-41664344)
chr8 (103-194)||(4987246-4987337)
chr8 (142-196)||(14345099-14345153)
chr8 (362-423)||(13091488-13091549)
chr8 (362-423)||(43247455-43247516)
chr8 (157-197)||(12135143-12135183)
[»] chr2 (12 HSPs)
chr2 (80-349)||(33515219-33515488)
chr2 (74-207)||(12646389-12646522)
chr2 (97-317)||(28253591-28253811)
chr2 (356-510)||(33515026-33515180)
chr2 (109-198)||(13416560-13416649)
chr2 (97-194)||(13551444-13551541)
chr2 (111-214)||(2206983-2207086)
chr2 (103-197)||(25380571-25380666)
chr2 (358-420)||(9667929-9667991)
chr2 (117-197)||(9668184-9668264)
chr2 (350-414)||(13551729-13551793)
chr2 (103-179)||(28399746-28399822)
[»] chr1 (13 HSPs)
chr1 (109-349)||(6051477-6051717)
chr1 (97-349)||(35541896-35542148)
chr1 (120-349)||(47622103-47622332)
chr1 (97-194)||(5497948-5498045)
chr1 (103-194)||(48072607-48072698)
chr1 (103-194)||(32352493-32352584)
chr1 (103-188)||(25504179-25504264)
chr1 (117-198)||(39431168-39431249)
chr1 (97-174)||(51052743-51052820)
chr1 (117-198)||(20796542-20796623)
chr1 (362-420)||(39431445-39431503)
chr1 (362-423)||(20796819-20796880)
chr1 (359-450)||(19171265-19171356)
[»] scaffold0034 (1 HSPs)
scaffold0034 (109-349)||(104869-105109)
[»] chr7 (8 HSPs)
chr7 (109-349)||(4937154-4937394)
chr7 (97-349)||(29968836-29969088)
chr7 (109-349)||(17721509-17721749)
chr7 (103-194)||(45993444-45993535)
chr7 (104-194)||(13440927-13441017)
chr7 (111-197)||(45164725-45164811)
chr7 (115-197)||(43572421-43572503)
chr7 (115-179)||(41340429-41340493)
[»] scaffold0472 (1 HSPs)
scaffold0472 (97-349)||(4114-4366)
[»] scaffold1137 (1 HSPs)
scaffold1137 (212-349)||(585-722)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 80 - 513
Target Start/End: Complemental strand, 55725002 - 55724569
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55725002 agacaggaagcacatttaggacggatttgagaagaatcaggcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 55724903  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55724902 aataacaggcttccaaaataataaccgacgcggatcgcctccaatcggaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 55724803  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcagcccgtaaagcacgaatattagcccaactt 379  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55724802 gccgcttcagacagccaagaggcattaatattgatcccaaccagagagcttttatggaaattaactttcagcccgtaaagcacgaacattagcccaactt 55724703  T
Q  380 ttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgtatcccgtgaatatatttgcttcca 479  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55724702 ttattccctattaagagcgtgtcatcagcaaattctaaatgagacactactactggattagcgccccccaccctgtatcccgtgaatatatttgcttcca 55724603  T
Q  480 ccaaagctttcttcaacacattgagtccttctgc 513  Q
     ||| |||||| |||||||||||||| |||||||    
T  55724602 tcaaggctttcatcaacacattgagttcttctgc 55724569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 99 - 341
Target Start/End: Original strand, 48312958 - 48313200
Alignment:
Q  99 gacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    |||| ||||||||||||| |  |||| |||||| || ||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| |||||||    
T  48312958 gacgaatttgagaagaattagacgacgaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacaattaacaacaggcttccaaaat 48313057  T
Q  199 aataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaag 298  Q
    |||||||| |||| ||| || |||||| |||  ||||||||||| ||| ||| |||  ||| ||||||||||| ||||||||| |||||||||| |||||    
T  48313058 aataaccggcgcgaatcacccccaatcggaaggcccaaatagaggaacggaattttttccactttgcaacccaacacagaagctgcttcagacaaccaag 48313157  T
Q  299 aggcattaatattgaccccaaccagagagcttttatggaaatt 341  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  48313158 aggcattaatattcacccccaccagagagcttttatggaaatt 48313200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 74 - 349
Target Start/End: Complemental strand, 19733289 - 19733015
Alignment:
Q  74 gagcacagacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaat 173  Q
    ||||| ||||||||||  || | ||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||| ||  | ||||||||| ||||||    
T  19733289 gagcatagacaggaagggcagtcaggacagatttgagaaggatcaatcgaccaccaaaagaaaggaaccgactatgctaaccaaacaatctagctttaat 19733190  T
Q  174 acgattaacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagc 273  Q
     ||||||||| ||||||||||||| |||||||||||| ||||||| |||||| ||| |||||||||||| |||   |||||||||| ||||| ||| | |    
T  19733189 tcgattaaca-caggctcccaaaacaataaccgacgccgatcgcccccaatcggaagacccaaatagaggaacgacactttacccactttgcgacctaac 19733091  T
Q  274 acagaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||||||||||||||||| ||| ||  |||| |||||||| |||||||  ||||||||||||||||| |||||||    
T  19733090 acagaagccgcttcagacaaccatgaaacattgatattgacaccaaccattgagcttttatggaaatttactttca 19733015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 109 - 349
Target Start/End: Complemental strand, 23641857 - 23641617
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |  ||||    
T  23641857 agaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgac 23641758  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  23641757 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaat 23641658  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  23641657 attaacccctaccagagaactcttatgaaaattaactttca 23641617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 80 - 349
Target Start/End: Original strand, 19756112 - 19756381
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||| ||| || | |||||||| || || |||||||| |||||||| || || ||||||||||| ||||||  ||||||||||||||||||||||||    
T  19756112 agacaggtagcgcagtcaggacggactttagtagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaatacgatt 19756211  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
     |||||||| |||||||| || |  | ||||||||| || ||||||   |  ||||||||||||||| ||| |||||| | ||||||||||| |||||||    
T  19756212 cacaacaggttcccaaaacaaaagacaacgcggatcacccccaatcgagagccccaaatagagaaacggaattttacctactttgcaacccaacacagaa 19756311  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |||||||| |||| ||| ||  |||||||||| ||| | |||||||| || ||||| || || |||||||    
T  19756312 gccgcttctgacaaccacgaatcattaatattaaccactaccagagaactcttatgaaagtttactttca 19756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 19783694 - 19783425
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||| ||| || | |||||||| || || |||||||| |||||||| || || ||||||||||| ||||||  ||||||||||||||||||||||||    
T  19783694 agacaggtagcgcagtcaggacggactttagtagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaatacgatt 19783595  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
     |||||||| |||||||| || |  | ||||||||| || ||||||   |  ||||||||||||||| ||| |||||| | ||||||||||| |||||||    
T  19783594 cacaacaggttcccaaaacaaaagacaacgcggatcacccccaatcgagagccccaaatagagaaacggaattttacctactttgcaacccaacacagaa 19783495  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |||||||| |||| ||| ||  |||||||||| ||| | |||||||| || ||||| || || |||||||    
T  19783494 gccgcttctgacaaccacgaatcattaatattaaccactaccagagaactcttatgaaagtttactttca 19783425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 1827835 - 1827566
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||  || | |||||||| || ||||||||||| || ||||| || |||||||||||||| ||||||  ||||||||||||||||||||||||    
T  1827835 agacaggaagagcagtcaggacggactttagaagaatcaaacggccaccgaaagagaggaaccgactttgccaaccagacaatctagatttaatacgatt 1827736  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
     |||| ||| |||||||| || |  ||||| ||||| || |||||    |  |||||||||||||||   | |||||| | ||||||||||| ||||||     
T  1827735 cacaataggttcccaaaacaaaatacgacgtggatcacccccaattgagagccccaaatagagaaacgagattttacctactttgcaacccaacacagag 1827636  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |||||||| |||| ||| ||  |||||||||| ||||| ||||||||||| ||||| |||||||| ||||    
T  1827635 gccgcttctgacaaccacgaatcattaatattaacccctaccagagagctcttatgaaaattaaccttca 1827566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 112 - 349
Target Start/End: Original strand, 47419681 - 47419918
Alignment:
Q  112 agaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcg 211  Q
    |||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |  |||||||    
T  47419681 agaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgacgcg 47419780  T
Q  212 gatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatatt 311  Q
    ||||||| ||||||   |  ||||||||||||||| | | ||| || | |||||| |||| ||||||||||||||| |||| ||| ||  ||||||||||    
T  47419781 gatcgcccccaatcgagagccccaaatagagaaacgggattttgcctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaatatt 47419880  T
Q  312 gaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||||| |||||||| || ||||| |||||||||||||    
T  47419881 aacccctaccagagaactcttatgaaaattaactttca 47419918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 109 - 349
Target Start/End: Complemental strand, 23647515 - 23647275
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    |||||||||||  ||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |   |||    
T  23647515 agaagaatcaaatgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagatgac 23647416  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  23647415 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaat 23647316  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  23647315 attaacccctaccagagaactcttatgaaaattaactttca 23647275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 120 - 350
Target Start/End: Complemental strand, 11586438 - 11586209
Alignment:
Q  120 gcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcggatcgcct 219  Q
    |||||||||||| || ||||||||||| | |||  |||||| |||||||||||| |||||||||||||| |||||||||||||| || |  |||||        
T  11586438 gcgaccaccaaaagaaaggaaccgactcttccatctagacagtctagatttaattcgattaacaacaggttcccaaaataataaacggcaaggatcagac 11586339  T
Q  220 ccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatattgaccccaa 319  Q
     ||||| |||  ||||||||||| ||||| |||| ||||| |||||||||||  |||| |||||||| || || ||||||||||||||| |||||||| |    
T  11586338 gcaatctgaaggcccaaatagaggaacagtactt-acccaatttgcaacccaaaacaggagccgctttagtcaaccaagaggcattaatgttgaccccta 11586240  T
Q  320 ccagagagcttttatggaaattaactttcag 350  Q
    ||||||||||||| ||  |||||| ||||||    
T  11586239 ccagagagcttttgtgataattaattttcag 11586209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 55299489 - 55299580
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||| ||||   ||||||||||||||||||||||| |||| ||| |||||    
T  55299489 gatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacaatctagatttaatacgattcacaataggttccca 55299580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 23872749 - 23872658
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  23872749 gatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccca 23872658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 40688957 - 40689043
Alignment:
Q  111 aagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||| ||||| || || |||||||| |||||| |||||| ||||||||| ||||| ||||| ||||| ||||||||    
T  40688957 aagaatcaagcgacctccaaaagaaagaaaccgactttgccaactagacagtctagattttatacggttaaccacaggttcccaaaa 40689043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 19162433 - 19162347
Alignment:
Q  111 aagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||| |||||||| || |||| ||| |||||| |||||| ||||||| ||||||| ||||| || || ||||||||    
T  19162433 aagaatcaagcgacctccaaaggaaagaaacctactttgccaactagacagtctagatctaatacggttaactaccggttcccaaaa 19162347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 19648563 - 19648654
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||||| ||| || ||| |||| |||||||| ||||||| ||||   |||| ||||||||| |||||||| |||||||| |||||    
T  19648563 gatttgagaagaaccaaacggccagcaaaagagaggaaacgactattccaacctgacactctagattttatacgattcacaacagggtccca 19648654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 20675903 - 20675984
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaa 184  Q
    |||||||| |||| ||||||||||||||| ||||  ||||||||||  |||   |||| |||||||||||||||||| ||||    
T  20675903 gatttgagtagaaccaagcgaccaccaaaagagaaaaaccgactattacaacccgacagtctagatttaatacgattcacaa 20675984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 8935942 - 8936033
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||||| ||| || | |||||| |||||||| ||||||| ||||   |||| ||||| ||| |||||||| |||||||| |||||    
T  8935942 gatttgagaagaaccaaacggcaaccaaaagagaggaaacgactattccaacctgacagtctagtttttatacgattcacaacagggtccca 8936033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 19115306 - 19115395
Alignment:
Q  105 tttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||| |||||| |||||||| |||||||| ||||||| ||||   |||| || || ||||| |||||| |||| ||| |||||    
T  19115306 tttgagaagaaccaagcggccaccaaaagagaggaaacgactattccaacccgacagtcgagctttaacacgattcacaataggatccca 19115395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 29553071 - 29552979
Alignment:
Q  105 tttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||| ||| ||||||||||| || ||||| | ||||| ||||   |||| ||||| | |||||||||| |||| ||| ||||||||    
T  29553071 tttgagaagaaccaaacgaccaccaaaagaaaggaaacaactattccaacccgacagtctagttctaatacgattcacaataggatcccaaaa 29552979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 74 - 350
Target Start/End: Original strand, 383 - 659
Alignment:
Q  74 gagcacagacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaat 173  Q
    ||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  383 gagcatagacaggaagcgcagttaggacggatttgagaagaatcaggcgaccaccaaaggagaggaaccgactatgccaaccagaaaatctagatttaat 482  T
Q  174 acgattaacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagc 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||| |    
T  483 acgattaacaacaggctcccaaaataataaccgacgtggatcgcctccaatcggaagacccaaatagagaaacggaactttacccactttgcaacccaac 582  T
Q  274 acagaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcag 350  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  583 acagaagccgcttcagacaaccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcag 659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 348 - 509
Target Start/End: Original strand, 689 - 850
Alignment:
Q  348 cagcccgtaaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccc 447  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  689 cagcccttaaagcacgaacattagcccaacttttattccctatcaagagcgtgtcatcagcaaattgtaaatgagacactactactagattagcgccccc 788  T
Q  448 caccctgtatcccgtgaatatatttgcttccaccaaagctttcttcaacacattgagtcctt 509  Q
    |||| |||||||||| || ||||||||||||||||| |||| | ||||||||||||||||||    
T  789 caccttgtatcccgtaaagatatttgcttccaccaaggcttgcatcaacacattgagtcctt 850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 80 - 349
Target Start/End: Original strand, 16179785 - 16180054
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||  || | ||||| |||||||||||  |||| | |||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||    
T  16179785 agacaggaagtgcaatcaggacagatttgagaagggtcaacctaccaccaaaggaaaggaactgactatgccaactagacaatctagatttaattcgatt 16179884  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||   |||||||||| ||||||||||| |||||||    
T  16179885 aacaacaggctcccaaattaataaccgtcgcggatcgcctccaatcggaagacccaaatagagaaacgacactttacccactttgcaacccaacacagaa 16179984  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||    
T  16179985 gccgcttcagacaaccaagaggcattaatattgacaccaactagagaacttttatggaaatttactttca 16180054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 82 - 349
Target Start/End: Original strand, 19891524 - 19891791
Alignment:
Q  82 acaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaa 181  Q
    ||||||||| || | | ||| |||||||| ||||||| | |||||| |||||| ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  19891524 acaggaagcgcagtcaagacagatttgagtagaatcaggtgaccactaaaggaaaggaaccgactatgctaaccagacaatctagatttaatacgattaa 19891623  T
Q  182 caacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagc 281  Q
    ||| ||||||||||||||||||||  || |||||||| |||||| |||  ||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  19891624 caataggctcccaaaataataaccagcgtggatcgcccccaatcggaaggcccaaatagagaaacggaactttacccactttgcaacccaacacagaagc 19891723  T
Q  282 cgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  19891724 cgcttcagacaaccaagaggcattaatattgaccccaacgagagagcttttatggaaattgactttca 19891791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 48569318 - 48569049
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||  || | ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||  ||||||||||||||| ||||||||    
T  48569318 agacaggaagtgcagtcaggacggatttgagaagaatcaaacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagattttatacgatt 48569219  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    |||||||||||||||||||||||| || |||||||| ||  ||||| |||  ||||||||||| |||  || |||||||| ||||||| ||| |||||||    
T  48569218 aacaacaggctcccaaaataataatcggcgcggatcaccctcaatcggaaggcccaaatagaggaacgaaattttacccactttgcaatccaacacagaa 48569119  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||||||||||| |||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||    
T  48569118 gccgcttcagacaaccaagaggcattaatattcacccccactagagagcttttatgaaaatttactttca 48569049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 74 - 349
Target Start/End: Complemental strand, 962464 - 962189
Alignment:
Q  74 gagcacagacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaat 173  Q
    ||||| ||||||||||  || | ||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||||  ||||||||||| ||||||    
T  962464 gagcatagacaggaagtgcagtcaggacagatttgagaaggatcaaccggccaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaat 962365  T
Q  174 acgattaacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagc 273  Q
     || |||||||| |||||| |||| |||||||| ||||||||||| |||||| ||| |||||||||||| ||| | |||||||||| ||||||||| | |    
T  962364 tcgtttaacaactggctcctaaaacaataaccggcgcggatcgcccccaatctgaagacccaaatagaggaacggtactttacccactttgcaacctaac 962265  T
Q  274 acagaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |||||||||||||||| || |||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  962264 acagaagccgcttcagccaaccaagaagcattgatattgacaccaaccagagagcttttatggaaatttactttca 962189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 95 - 349
Target Start/End: Complemental strand, 17077577 - 17077324
Alignment:
Q  95 ttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||  |||||||||| ||||| ||||||| ||| || ||||||||||||||||||  ||||||||||| |||||| |||||||||||||||| |||    
T  17077577 ttaggacaaatttgagaaggatcaaacgaccactaaaagaaaggaaccgactatgccaaccagacaatctagttttaattcgattaacaacaggcttcca 17077478  T
Q  195 aaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagc 294  Q
    |||||||||||| |||  || ||||||||||  || |||||||||||| |||   |||||||||| ||||||||||| |||||||||||||||||||| |    
T  17077477 aaataataaccggcgcaaattgcctccaatcgaaagacccaaatagaggaacgacactttacccactttgcaacccaacacagaagccgcttcagacaac 17077378  T
Q  295 caagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  17077377 caagaggcattaatattgaccccgaccagagagc-tttatggaaatttactttca 17077324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 109 - 349
Target Start/End: Original strand, 2365152 - 2365392
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |   |||    
T  2365152 agaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagatgac 2365251  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  2365252 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaat 2365351  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  2365352 attaacccctaccagagaactcttatgaaaattaactttca 2365392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 112 - 349
Target Start/End: Complemental strand, 34332078 - 34331841
Alignment:
Q  112 agaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcg 211  Q
    |||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||| |||||||| |||||||| || |  |||||||    
T  34332078 agaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaatacgattcacaacaggttcccaaaacaaaagtcgacgcg 34331979  T
Q  212 gatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatatt 311  Q
    |||| |  ||||||   |  ||||||||||||||| | | |||||| | ||||||||||| ||||||||||||||| |||| ||| ||  ||||||||||    
T  34331978 gatcacacccaatcgagagccccaaatagagaaacgggattttacctactttgcaacccaacacagaagccgcttctgacaaccacgaatcattaatatt 34331879  T
Q  312 gaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||||| |||||||| || ||||| || || |||||||    
T  34331878 aacccctaccagagaactcttatgaaagtttactttca 34331841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 80 - 259
Target Start/End: Complemental strand, 12341550 - 12341371
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | ||| ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||  |||||||||||| || ||| ||||    
T  12341550 agacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagactttatatgatt 12341451  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttaccca 259  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||   |  ||||| || |||||| ||||||||||||    
T  12341450 aacaataggctcccaaaataataaccggcgcggattacctccaatcgagaggcccaagtatagaaacggaactttaccca 12341371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 95 - 349
Target Start/End: Complemental strand, 19919509 - 19919255
Alignment:
Q  95 ttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| | || || |||||||| |||||||| || || || |||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||    
T  19919509 ttaggacgaactttagtagaatcaaacgaccaccgaaagatagaaaccgactttgccaaccagacaatctagatttaatacgatctaccacaggttccca 19919410  T
Q  195 aaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagc 294  Q
    ||| || |  |||||||||||||| |||||| | |  |||| |||||||||| | | |||||| | ||| || |||| ||||||||||||||| ||||||    
T  19919409 aaacaaaagtcgacgcggatcgcccccaatcgggagtcccatatagagaaacgggattttacctactttacaccccaacacagaagccgcttctgacagc 19919310  T
Q  295 caagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    || ||  |||||||||| ||||| ||||| || || || || |||||||||||||    
T  19919309 cacgactcattaatattaacccctaccagtgaactcttgtgaaaattaactttca 19919255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 356 - 501
Target Start/End: Complemental strand, 12334075 - 12333930
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||| | ||||||||| ||||| ||||||||||| ||||| ||||    
T  12334075 aaagcacgaacattagcccaacttttattccctatcaagagcgtatcgtcagcaaattgaagatgagacaccactacaggattagcgcctcccacactgt 12333976  T
Q  456 atcccgtgaatatatttgcttccaccaaagctttcttcaacacatt 501  Q
    | ||||| || | |||| |||| ||||  |||||| ||||||||||    
T  12333975 aacccgtaaagacatttccttcaaccatggctttcatcaacacatt 12333930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 367 - 501
Target Start/End: Original strand, 19891841 - 19891974
Alignment:
Q  367 attagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgtatcccgtgaat 466  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||  |||||  |||||||| ||||||| ||||||||||| ||     
T  19891841 attagcccaacttttattccatatcaggagcgtatcatcaacaaattgtaaatgagacatcactacaagattagcg-cccccactctgtatcccgtaaag 19891939  T
Q  467 atatttgcttccaccaaagctttcttcaacacatt 501  Q
    | ||||||||| ||||| |||||| ||| ||||||    
T  19891940 acatttgcttcaaccaaggctttcatcaccacatt 19891974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 15313222 - 15313295
Alignment:
Q  276 agaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  15313222 agaatccgcttcagacaaccaagaggcattaatattgaccccaaccagagggcttttatggaaatttactttca 15313295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 12334202 - 12334114
Alignment:
Q  261 tttgcaacccagcacagaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |||||| |||| |||||||||||| | ||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||    
T  12334202 tttgcaccccaacacagaagccgccttagacaaccaagagacactaatgttgaccccaaccagagagcttttatggaaattaactttca 12334114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 15313338 - 15313441
Alignment:
Q  359 gcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgtatc 458  Q
    ||||||| ||||||||||||||| || || || ||||| || |||||| |||| |||||||| ||||| || || ||||| ||||| |||||||||||||    
T  15313338 gcacgaacattagcccaacttttgtttccaattaagagtgtatcatcagcaaactgtaaatgtgacacaaccaccggatttgcgccacccaccctgtatc 15313437  T
Q  459 ccgt 462  Q
    ||||    
T  15313438 ccgt 15313441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 453
Target Start/End: Complemental strand, 17077282 - 17077188
Alignment:
Q  359 gcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccct 453  Q
    ||||||| ||||||||||||||| || || || ||||| || |||||| |||| |||||||| | |||||| |||||||| ||||| ||||||||    
T  17077282 gcacgaacattagcccaacttttgtttccaattaagagtgtatcatcagcaaactgtaaatgtggcactaccactggatttgcgccacccaccct 17077188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 6175749 - 6175668
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaa 184  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||| ||||   |||| ||||||||||||| |||| ||||    
T  6175749 gatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagatttaatatgattcacaa 6175668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 22733772 - 22733671
Alignment:
Q  74 gagcacagacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaat 173  Q
    ||||| ||||||||||  || |||||||||| || ||||||| |||||||||||| | |||| | ||||  || ||||||| ||||||||||| ||||||    
T  22733772 gagcatagacaggaagtgcagttaggacggacttcagaagaaccaagcgaccaccgatggagggaaaccagctttgccaaacagacaatctagttttaat 22733673  T
Q  174 ac 175  Q
    ||    
T  22733672 ac 22733671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 25785883 - 25785972
Alignment:
Q  108 gagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    |||||| |||||||||||||| |||||||| || ||||| ||  ||  ||||||||||||||| ||||| |||| |||||||| ||||||    
T  25785883 gagaaggatcaagcgaccaccgaaggagagaaatcgactttgttaaccagacaatctagattttatacggttaataacaggcttccaaaa 25785972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 10868526 - 10868607
Alignment:
Q  117 caagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    ||||||||||||||| ||||| ||||| |||| ||||   |||| |||||||||||| | ||| |||||||  |||||||||    
T  10868526 caagcgaccaccaaacgagagaaaccggctattccaacccgacattctagatttaattctattcacaacagagtcccaaaat 10868607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 8130847 - 8130935
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||||| ||||| || || || ||||| |||||| |||||| ||||||| | ||||  ||||  ||||| ||||||||    
T  8130847 agaagaatcaagcgacctccaaatgaaagaaatcgactttgccaattagacagtctagatctgatacagttaaacacaggttcccaaaa 8130935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 11757759 - 11757683
Alignment:
Q  121 cgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    |||||||| ||||| |||||||| || ||||||  | ||||||||||||| ||||| ||||| | ||| ||||||||    
T  11757759 cgaccaccgaaggataggaaccggctttgccaaccaaacaatctagattttatacggttaaccataggttcccaaaa 11757683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 42674710 - 42674634
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    |||||||| ||||||||||| |||||||| ||||| || | ||||| |||| | | || |||||||||||| |||||    
T  42674710 gatttgaggagaatcaagcggccaccaaaagagagaaatctactattccaactcgtcagtctagatttaatgcgatt 42674634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 17605629 - 17605360
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | ||| ||||||||||| ||||| |||||||||||||| ||| ||| | |||||||| ||||||||||||| || ||||||||    
T  17605629 agacaggaagcgcagtcaagacagatttgagaagtatcaaacgaccaccaaaggaaaggtacctattatgccaactagacaatctagactttatacgatt 17605530  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||| |||||||||||||||||| || |||||||  ||||||||| | |  ||||| || |||||| |||||||||||| |||||| |||| |||||||    
T  17605529 aacaataggctcccaaaataataaacggcgcggattacctccaatcgggaggcccaagtatagaaacggaactttacccactttgcaccccaacacagaa 17605430  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17605429 gccgcctcagacaaccaagagacattaatgttgaccccaaccagagagcttttatggaaattaactttca 17605360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 21629417 - 21629148
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | ||| ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||  |||||||||||| || |||| |||    
T  21629417 agacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagactttatacaatt 21629318  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||| ||||||||||||||||||||| |||||||  |||| |||| | |  ||||| || |||||| ||| |||||||| |||||| |||| |||||||    
T  21629317 aacaataggctcccaaaataataaccggcgcggattacctctaatcgggaggcccaagtatagaaacggaattttacccactttgcaccccaacacagaa 21629218  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21629217 gccgcctcagacaaccaagaggcattaatgttgaccccaaccagagagcttttatggaaattaactttca 21629148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 13938580 - 13938832
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    ||||| ||||||||||| ||||| || |||||||| || |||||||||||||||| |  ||||||||||| |||||| || |||||||| ||||||||||    
T  13938580 aggacagatttgagaaggatcaatcggccaccaaaagaaaggaaccgactatgccgaccagacaatctagctttaattcgtttaacaactggctcccaaa 13938679  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | |||||||| || |||||||| ||||||  || |||||||||||| ||| | |||||||||| ||||||||| | ||||| ||||||||||| || |||    
T  13938680 acaataaccggcgtggatcgcccccaatcgaaagacccaaatagaggaacggtactttacccactttgcaacctaacacaggagccgcttcagccaacca 13938779  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  13938780 agaagcattgatattgacaccaaccagagagcttttatggaaatttactttca 13938832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 97 - 349
Target Start/End: Complemental strand, 18681852 - 18681600
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    ||||| |||||||| || ||||| |||||||||||  | ||||||||||||||||||  || |||||||| ||||||||||||| | | ||| |||||||    
T  18681852 aggacagatttgagcaggatcaaacgaccaccaaaataaaggaaccgactatgccaaccagtcaatctagctttaatacgattatcgataggatcccaaa 18681753  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    |||| | |||  ||||||| || |||||| ||||||||| ||||||||||   |||||||||| ||| ||||| | |||||||||||||||||||| |||    
T  18681752 ataacacccggtgcggatcacccccaatcggaatacccatatagagaaacgatactttacccactttacaacctaacacagaagccgcttcagacaacca 18681653  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18681652 agaagcattgatattgaccccaaccagagagcttttatggaaattaactttca 18681600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 82 - 350
Target Start/End: Complemental strand, 15956269 - 15956008
Alignment:
Q  82 acaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaa 181  Q
    ||||||||| || |||||||| | |  ||||| || |||||||||||||| || ||||||||||||||||||  ||||||| ||| |||||| |||||||    
T  15956269 acaggaagcgcagttaggacgaactatagaaggattaagcgaccaccaaaagaaaggaaccgactatgccaaccagacaatatagttttaattcgattaa 15956170  T
Q  182 caacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagc 281  Q
    ||||||| ||||||||||||||||| |||||||| || |||  |       |||||||||| |||   |||||||||| ||||||||||| ||||||||     
T  15956169 caacaggttcccaaaataataaccggcgcggatcacccccaggc-------ccaaatagaggaacgacactttacccagtttgcaacccaacacagaagt 15956077  T
Q  282 cgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcag 350  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15956076 cgcttaagacaaccaagaggcattaatattgacccctaccagagagcttttatggaaattaactttcag 15956008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 17577012 - 17576743
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | ||| |||||||| ||||||||||||| ||||||||| ||| ||| ||||||||||  |||||||||||| || ||||| ||    
T  17577012 agacaggaagcgcagtcaagacagatttgagcagaatcaagcgactaccaaaggaaaggtacctactatgccaaccagacaatctagactttatacgttt 17576913  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||| ||||||||||||||||||||| | |||||  ||||||||| | |  ||||| || |||||| |||||||||||| |||||| |||| || ||||    
T  17576912 aacaataggctcccaaaataataaccggctcggattacctccaatcgggaggcccaagtatagaaacggaactttacccactttgcaccccaacaaagaa 17576813  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||| ||||||| ||| | | ||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  17576812 gccgcctcagacaaccacgggacattaatgttgaccccaaccagagagcttttatgaaaattgactttca 17576743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 136 - 349
Target Start/End: Complemental strand, 24766663 - 24766450
Alignment:
Q  136 aggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaataccca 235  Q
    ||||||||||| ||||||  ||||||||||| ||||||||||||||||||||| |||||||| ||||| | ||||||||| || |||||||  |  ||||    
T  24766663 aggaaccgactttgccaaccagacaatctagttttaatacgattaacaacaggttcccaaaacaataatcaacgcggatcacccccaatcaagagcccca 24766564  T
Q  236 aatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatg 335  Q
    ||||||||||| | | |||||| | ||||||||||| || |||||||||||| || | ||| ||  |||||||||| ||||| |||||||| || |||||    
T  24766563 aatagagaaacgggattttacctactttgcaacccaacatagaagccgcttctgaaaaccacgaatcattaatattaacccctaccagagaactcttatg 24766464  T
Q  336 gaaattaactttca 349  Q
    ||| || |||||||    
T  24766463 gaagtttactttca 24766450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 112 - 349
Target Start/End: Original strand, 2554482 - 2554718
Alignment:
Q  112 agaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcg 211  Q
    |||||||| |||||||| || || ||||||||||| || |||  |||||||||||||||||||||||| |||||||| |||||||| || |  |||||||    
T  2554482 agaatcaaacgaccaccgaaagaaaggaaccgactttgtcaaccagacaatctagatttaatacgattcacaacaggttcccaaaacaa-agtcgacgcg 2554580  T
Q  212 gatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatatt 311  Q
    |||| || | ||||   |  ||||||||||||||||  | |||||| | ||||||||||| ||||||||||||||| |||| ||| ||  ||||||||||    
T  2554581 gatcacccctaatcgagagccccaaatagagaaacaagattttacctactttgcaacccaacacagaagccgcttctgacaaccacgaatcattaatatt 2554680  T
Q  312 gaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||||| |||||||| || ||||| || || |||||||    
T  2554681 aacccctaccagagaactcttatgaaagtttactttca 2554718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 356 - 501
Target Start/End: Complemental strand, 17605321 - 17605176
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||| ||||| ||||||||||| ||||| ||||    
T  17605321 aaagtacgaacattagcccaacttttattccctatcaagagcgtatcatcagcaaattgaagatgagacaccactaccggattagcgcctcccacactgt 17605222  T
Q  456 atcccgtgaatatatttgcttccaccaaagctttcttcaacacatt 501  Q
    | ||||| || | ||||||||| ||||  |||||| ||||||||||    
T  17605221 aacccgtaaagacatttgcttcaaccatggctttcatcaacacatt 17605176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 356 - 495
Target Start/End: Complemental strand, 21629109 - 21628970
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||| | ||||||||| ||||| | ||||||||| ||||| ||||    
T  21629109 aaagcacgaacattagcccaacttttattccctatcaagagcgtatcgtcagcaaattgaagatgagacaccactacagaattagcgcctcccacactgt 21629010  T
Q  456 atcccgtgaatatatttgcttccaccaaagctttcttcaa 495  Q
    | ||||| || | ||||||||| |||| ||||||| ||||    
T  21629009 aacccgtaaagacatttgcttcaaccatagctttcatcaa 21628970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 17576704 - 17576598
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||||||| |||| || | ||||||||| || || ||||||| ||| ||||| ||||    
T  17576704 aaagcacgaacattctcccaacttttattccctatcaagagcgtgtcatcagcaaactgaagatgagacaccacgacaggattagtgccacccacactgt 17576605  T
Q  456 atcccgt 462  Q
    | |||||    
T  17576604 aacccgt 17576598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 26206195 - 26206292
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||| ||||||||||||| ||||||||||||||| || || |||||||||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  26206195 aggacagatttgagaagaaccaagcgaccaccaaaagatagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccca 26206292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 2554768 - 2554851
Alignment:
Q  367 attagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccac 450  Q
    ||||||||||||||||||||| || |  ||||| |||||| |||| |||||||||||||| || |||||| | |||| ||||||    
T  2554768 attagcccaacttttattcccaataagaagcgtatcatcagcaaactgtaaatgagacacaaccactggagtcgcgcgccccac 2554851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 15674700 - 15674791
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| |||| | ||||||||||||| ||||| ||||| |||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  15674700 gatttgagtagaacccagcgaccaccaaaagagagaaaccgtctattccaacccgacagtctagatttaatacgattcacaataggttccca 15674791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 33640785 - 33640876
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||||| ||| || |||||||| |||||||| ||||||| ||||   |||| |||||| || |||||||| |||||||| |||||    
T  33640785 gatttgagaagaaccaaacggccaccaaaagagaggaaacgactattccaacctgacagtctagactttatacgattcacaacagggtccca 33640876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 12673385 - 12673296
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    ||||| |||||||||||||| ||||| |  ||| |||| ||||||  || || ||||||||| ||||| |||||||||||||||| ||||    
T  12673385 agaaggatcaagcgaccaccgaaggaaaaaaactgactttgccaaccagccagtctagattttatacggttaacaacaggctccccaaat 12673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 482
Target Start/End: Complemental strand, 15955959 - 15955844
Alignment:
Q  367 attagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgtatcccgtgaat 466  Q
    ||||||||| ||||| ||||| || | |||||| |||||| |||| || | |||||||||  | |||| |||||||||||||||   | | ||||| |||    
T  15955959 attagcccagcttttcttcccaattaggagcgtatcatcagcaaactgaagatgagacacagccactgaattagcgccccccacagagcaccccgtaaat 15955860  T
Q  467 atatttgcttccacca 482  Q
    ||||||||||| ||||    
T  15955859 atatttgcttcaacca 15955844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 18589224 - 18589282
Alignment:
Q  124 ccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaac 182  Q
    ||||| ||||||||||||| ||| ||||||  ||||||||||||||| ||||| |||||    
T  18589224 ccaccgaaggagaggaaccaactttgccaaccagacaatctagattttatacggttaac 18589282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 13086425 - 13086505
Alignment:
Q  117 caagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    |||||||||||| || || || ||||| |||| |||| | |||| |||||||||||| | ||| |||||||| ||||||||    
T  13086425 caagcgaccaccgaacgaaagaaaccggctattccaacttgacagtctagatttaattctattcacaacaggttcccaaaa 13086505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 33385268 - 33385007
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | ||| ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||  |||||||||||| || ||||||||    
T  33385268 agacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagactttatacgatt 33385169  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||| ||||||||||||||||||||| | |||||  ||||| ||  |||  ||||| |||||||||||||||||||||| |||||| |||| |||||||    
T  33385168 aacaataggctcccaaaataataaccggctcggattacctcctattggaaggcccaagtagagaaacagaactttacccactttgcaccccaacacagaa 33385069  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaatt 341  Q
    ||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||    
T  33385068 gccgcctcagacaaccaagagacattaatattgaccccaatcagagagcttttatggaaatt 33385007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 80 - 341
Target Start/End: Original strand, 27796329 - 27796589
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||  || | |||||| ||||||||||||| |  ||||||||||| || ||||||||||||||||||  ||||||||||| ||||||||||||    
T  27796329 agacaggaagtgcagtcaggacgaatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagttttaatacgatt 27796428  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||||||||||||||||||||||||| |||||||| || |||||| |||  ||||||||||| |||  || ||| |||| ||||||||||| |||||||    
T  27796429 aacaacaggctcccaaaataataaccggcgcggatcacc-ccaatcggaaggcccaaatagaggaacgaaatttttcccactttgcaacccaacacagaa 27796527  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaatt 341  Q
    || |||||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  27796528 gctgcttcagacaaccaagaggcattagtattcacccccaccagagagcttttatggaaatt 27796589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 25856734 - 25856465
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||| | || ||| ||| |||||||| ||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||| || ||||| ||    
T  25856734 agacaggaatcgcagttaagacagatttgagcagaatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagactttatacgttt 25856635  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||| ||||||||||||||||||||| | |||||  ||||||||| | |  ||||| || |||||| |||||||||||| |||||| |||| ||||||     
T  25856634 aacaataggctcccaaaataataaccggctcggattacctccaatcgggaggcccaagtatagaaacggaactttacccactttgcaccccaacacagag 25856535  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||    
T  25856534 gccgcctcagacaaccacgagacattaatgttgaccccaaccagagagcttttatgaaaattaactttca 25856465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 104 - 349
Target Start/End: Original strand, 33170527 - 33170772
Alignment:
Q  104 atttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataa 203  Q
    |||||||||| ||||| ||  ||||||| || ||||||||||||||||||  ||||||||||| |||||| || |||||||  ||||||||||| |||||    
T  33170527 atttgagaaggatcaaccggtcaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaattcgtttaacaattggctcccaaaacaataa 33170626  T
Q  204 ccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggca 303  Q
    ||| ||||||||||| |||||| ||| |||||||||||| ||  | |||||||||| ||||||||| | ||||||||||||| ||| || |||||| |||    
T  33170627 ccggcgcggatcgcccccaatcggaagacccaaatagaggaatggtactttacccactttgcaacctaacacagaagccgctccagccaaccaagaagca 33170726  T
Q  304 ttaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    || |||||||  |||||||||||||||||||||||||| |||||||    
T  33170727 ttgatattgataccaaccagagagcttttatggaaatttactttca 33170772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 97 - 349
Target Start/End: Complemental strand, 28534954 - 28534702
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || ||||||||||| ||||||||||| || ||||||||||| ||||||   |||||||||  ||||||||||||||||||||| |||||||    
T  28534954 aggacggacttaagaagaatcaaacgaccaccaaaagaaaggaaccgactttgccaacctgacaatctatttttaatacgattaacaacaggttcccaaa 28534855  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | ||||| |||||||||||||| ||||||   |  ||||||||||||||| | | |||||| | ||||||||||| ||| ||||||||||| |||| |||    
T  28534854 acaataatcgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaacccaacacggaagccgcttctgacaacca 28534755  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  || |||||||  |||| |||| ||| || ||||| || ||||||||||    
T  28534754 cgaaccagtaatattatcccctaccaaagaactcttatgaaagttaactttca 28534702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 164 - 350
Target Start/End: Complemental strand, 27165305 - 27165120
Alignment:
Q  164 tagatttaatacgattaacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccatttt 263  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| | |  ||||||||||| |||   |||||||||| |||    
T  27165305 tagatttaattcgattaacaacatgctcccaaaataataaccgacgcggatcgcccccaatcgggaggcccaaatagaggaacgacactttacccacttt 27165206  T
Q  264 gcaacccagcacagaagccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcag 350  Q
    |||||||| |||| ||||||||| | ||| |||||||||||| ||||||| |||||||| |||  |||||||||| || ||||||||    
T  27165205 gcaacccaacacataagccgcttaatacaaccaagaggcatttatattgatcccaaccaaaga-attttatggaagttgactttcag 27165120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 109 - 349
Target Start/End: Original strand, 42514594 - 42514834
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |  ||||    
T  42514594 agaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgac 42514693  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  ||| |||    
T  42514694 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcataaat 42514793  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  42514794 attaacccctaccagagaactcttatgaaaattaactttca 42514834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 349
Target Start/End: Complemental strand, 30731592 - 30731340
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || || |||||||| |||||||| || || ||||||||||| | ||||  |||||||||||||||||||||||  || ||||| |||||||    
T  30731592 aggacggactttagtagaatcaaacgaccaccgaaagataggaaccgacttttccaaccagacaatctagatttaatacgatccaccacaggttcccaaa 30731493  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  |||||||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||||||     
T  30731492 acaaaagtcgacgcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacagccg 30731393  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  |||||||||| ||||| ||||| || || || || |||||||||||||    
T  30731392 cgaatcattaatattaacccctaccagtgaactcttgtgaaaattaactttca 30731340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 23239245 - 23239495
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || ||||||||| | |||||||| || || ||||||||||| ||||||  |||||||||||||||| ||||||| |||||||| |||||||    
T  23239245 aggacggactttagaagaatcgaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttagtacgattcacaacaggttcccaaa 23239344  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  ||||| ||||| || ||  ||   |  ||||||||||||||| | | |||| | | |||||| |||| ||||||||||||||| |||| |||    
T  23239345 acaaaagtcgacgtggatcaccccc--tcgagagccccaaatagagaaacgggattttaactactttgcaccccaacacagaagccgcttctgacaacca 23239442  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  |||||||||| ||||| |||||||| || ||||| || ||||||||||    
T  23239443 cgaatcattaatattaacccctaccagagaactcttatgaaagttaactttca 23239495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 501
Target Start/End: Complemental strand, 33384960 - 33384815
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    ||||||| || ||||||||||||||||||| ||||||| ||| | |||||| ||||||| | ||||||||| ||||||||||||||||| ||||| ||||    
T  33384960 aaagcacaaacattagcccaacttttattctctatcaaaagcatatcatcagcaaattgaagatgagacaccactactggattagcgcctcccacactgt 33384861  T
Q  456 atcccgtgaatatatttgcttccaccaaagctttcttcaacacatt 501  Q
    | || || || | | ||||||| ||||  |||||| ||||||||||    
T  33384860 aacctgtaaagacacttgcttcaaccatggctttcatcaacacatt 33384815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 8299443 - 8299333
Alignment:
Q  115 atcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcggat 214  Q
    |||||||||||||||||||| ||| ||| ||||||||||  |||||||||||| || ||||| ||||||| ||||| ||||||||||||||| | |||||    
T  8299443 atcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagactttatacgtttaacaataggcttccaaaataataaccggctcggat 8299344  T
Q  215 cgcctccaatc 225  Q
      |||||||||    
T  8299343 tacctccaatc 8299333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 462
Target Start/End: Complemental strand, 25856426 - 25856320
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||||||||| ||| ||||||||||||||||||| ||||||| |||||||| |||| || | ||||||||| || || ||||||| ||| ||||| ||||    
T  25856426 aaagcacgaacatttgcccaacttttattccctaccaagagcatgtcatcagcaaactgaagatgagacaccacgacaggattagtgccacccacactgt 25856327  T
Q  456 atcccgt 462  Q
    | |||||    
T  25856326 aacccgt 25856320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 27796636 - 27796730
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccac 450  Q
    ||||| |||| ||| ||||||||||| ||||||||||||||||| |||||  ||||||||||||| ||||| ||| | |||||||| ||||||||    
T  27796636 aaagcgcgaacatttgcccaacttttcttccctatcaagagcgtatcatctgcaaattgtaaatgggacaccactgccggattagcaccccccac 27796730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 36256651 - 36256737
Alignment:
Q  111 aagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||| ||||| || || |||||||| |||||| |||||| ||||||||| ||||| ||||| ||||| ||||||||    
T  36256651 aagaatcaagcgacctccaaaagaaagaaaccgactttgccaactagacagtctagattttatacggttaaccacaggttcccaaaa 36256737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 30509298 - 30509201
Alignment:
Q  100 acggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    |||| ||| ||||| ||||||||||||||||| ||||| ||||| |||| |||    ||||||||||||||||||||||| || ||||| ||||||||    
T  30509298 acggctttcagaaggatcaagcgaccaccaaaagagagaaaccggctattccaccccgacaatctagatttaatacgattcacgacaggatcccaaaa 30509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 30549641 - 30549544
Alignment:
Q  100 acggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    |||| ||| ||||| ||||||||||||||||| ||||| ||||| |||| |||    ||||||||||||||||||||||| || ||||| ||||||||    
T  30549641 acggctttcagaaggatcaagcgaccaccaaaagagagaaaccggctattccaccccgacaatctagatttaatacgattcacgacaggatcccaaaa 30549544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 1821342 - 1821431
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt-aacaacaggctcccaaaa 197  Q
    |||||||||||||||||||| ||||| || ||||   | ||||||  ||||||||||| |||||||||||| |||||||||||| |||||    
T  1821342 agaagaatcaagcgaccaccgaaggaaagaaaccatttttgccaaccagacaatctagttttaatacgattaaacaacaggctcgcaaaa 1821431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 501
Target Start/End: Complemental strand, 27165079 - 27164937
Alignment:
Q  359 gcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgtatc 458  Q
    ||||||| ||| ||| |||||||||||||||| ||||| || |||||| |||| |||||||| ||||| || | |||||| ||||| | ||| ||| | |    
T  27165079 gcacgaacatttgcctaacttttattccctattaagagtgtatcatcagcaaactgtaaatgtgacacaacaattggatttgcgccactcacactgcacc 27164980  T
Q  459 ccgtgaatatatttgcttccaccaaagctttcttcaacacatt 501  Q
    |  | || |||||||| || ||||| |||||| |||| |||||    
T  27164979 cattaaagatatttgcctcaaccaaggctttcatcaaaacatt 27164937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 22094519 - 22094430
Alignment:
Q  105 tttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||| |||  | |||||||| |||||||| ||||||| ||||   |||| ||||| |||||||||||| |||||||| |||||    
T  22094519 tttgagaagaaccaaatggccaccaaaagagaggaaacgactattccaacccgacagtctagctttaatacgattcacaacaggatccca 22094430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 13878782 - 13878521
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||  || | |||||| ||||||||||||| |  ||||||||||| || ||||||||||||||||||  |||||||| || ||||||||||||    
T  13878782 agacaggaagtgcagtcaggacgaatttgagaagaattagacgaccaccaaaagaaaggaaccgactatgccaaccagacaatcgagttttaatacgatt 13878683  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||||||||||||||||||||||||| |||||||| || |||||| |||  ||||||||||| ||| ||| ||| |||| ||||||||||| ||| |||    
T  13878682 aacaacaggctcccaaaataataaccggcgcggatcacccccaatcggaaggcccaaatagaggaacggaatttttcccactttgcaacccaacaccgaa 13878583  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaatt 341  Q
    || |||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  13878582 gctgcttcagacaaccaagaggcattaatattcacccccaccagagagcttttgtggaaatt 13878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 80 - 349
Target Start/End: Original strand, 20825145 - 20825414
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | |||  ||||||| ||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||| || ||||| ||    
T  20825145 agacaggaagcgcagtcaagacatatttgagcagaatcaagcgaccaccaaaggaaaggtacctactatgccaaccagacaatctagactttatacgttt 20825244  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    ||||| ||||||||||||||||||||| | |||||  ||||||||| | |  ||||| || |||||  |||||||||||| |||||| |||| |||||||    
T  20825245 aacaataggctcccaaaataataaccggctcggattacctccaatcgggaggcccaagtatagaaatggaactttacccactttgcaccccaacacagaa 20825344  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  20825345 gccgcctcagacaaccacgagacattaatgttgaccccaaccagagagcttttatgaaaattgactttca 20825414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 95 - 350
Target Start/End: Original strand, 10530520 - 10530775
Alignment:
Q  95 ttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||||| || ||||| || | |||  ||||||| || | ||||||||||||||||  |||||||||||||||||| |||||||||||||| | |||    
T  10530520 ttaggacggactttagaaggattaggcggtcaccaaaagaaatgaaccgactatgccaagcagacaatctagatttaattcgattaacaacaggtttcca 10530619  T
Q  195 aaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagc 294  Q
    ||||||||| || || |||||  |  |||||||||  ||||||||||| |||   |||||||||| |||| |||||| ||||||||| |||||||||| |    
T  10530620 aaataataatcggcgaggatcatcgtcaatcagaaggcccaaatagaggaacgatactttacccaatttgtaacccaacacagaagctgcttcagacaac 10530719  T
Q  295 caagaggcattaatattgaccccaaccagagagcttttatggaaattaactttcag 350  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  10530720 caagaggcattaatattgacccctaccagagagcttttatgataattaactttcag 10530775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 97 - 349
Target Start/End: Complemental strand, 41664646 - 41664394
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || || |||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||| |||||||| |||||||    
T  41664646 aggacggactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgattcacaacaggttcccaaa 41664547  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  ||||||||||| || ||||||   |  ||||||||||||||||| | |||||| | ||||||||||| || |||||||||||| |||| |||    
T  41664546 acaaaagacgacgcggatcacccccaatcgagagccccaaatagagaaacaggattttacctactttgcaacccaacatagaagccgcttctgacaacca 41664447  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  |||||||||| ||||| |||||||| || ||||| || || |||||||    
T  41664446 cgaatcattaatattaacccctaccagagaactcttatgaaagtttactttca 41664394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 110 - 349
Target Start/End: Original strand, 32267429 - 32267668
Alignment:
Q  110 gaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacg 209  Q
    |||||||||| |||||||| || || ||||||||||| ||||||  ||||||||||||||||||||| || |||||||| |||||||| || |  |||||    
T  32267429 gaagaatcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaatacggttcacaacaggttcccaaaacaaaagtcgacg 32267528  T
Q  210 cggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaata 309  Q
     ||||| || ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  ||||||||    
T  32267529 tggatcacccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaata 32267628  T
Q  310 ttgaccccaaccagagagcttttatggaaattaactttca 349  Q
    || ||||| |||||||| || ||||| |||||||||||||    
T  32267629 ttaacccctaccagagaactcttatgaaaattaactttca 32267668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 8300665 - 8300917
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||| ||||||  || |||||||||||||||||| || |||||||  |||||||    
T  8300665 aggacggactttagaagaatcaaacggccaccgaaggaaagaaaccgactttgccaaccagccaatctagatttaatacggttcacaacagcttcccaaa 8300764  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  ||||| |||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| |||||| |||||||| |||| |||    
T  8300765 acaaaagtcgacgaggatcgccgccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagatgccgcttctgacaacca 8300864  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  |||||||||||||||| |||||||| || ||||| |||||||||||||    
T  8300865 cgaatcattaatattgacccctaccagagaactcttatgaaaattaactttca 8300917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 99 - 349
Target Start/End: Original strand, 9923465 - 9923715
Alignment:
Q  99 gacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    |||||| || ||||||| ||| ||||||||||| || ||||| ||||| ||||||  ||||||||||  |||||| |||||||||||||| ||||||||     
T  9923465 gacggacttaagaagaaccaaacgaccaccaaaagaaaggaatcgactttgccaaccagacaatctatttttaatgcgattaacaacaggttcccaaaac 9923564  T
Q  199 aataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaag 298  Q
    ||||| |||||||||||||| ||||||   |  ||||| ||||||||| | | |||||| | ||||||||||| ||| ||||||||||  |||| ||| |    
T  9923565 aataatcgacgcggatcgcccccaatcgagagccccaagtagagaaactggattttacctactttgcaacccaacacggaagccgcttttgacaaccacg 9923664  T
Q  299 aggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    |  || ||||||| ||||| |||| ||| || ||||| |||||||||||||    
T  9923665 aaccagtaatattaacccctaccaaagaactcttatgaaaattaactttca 9923715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 109 - 349
Target Start/End: Original strand, 7925260 - 7925500
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || |||||||||||   ||||  |||||||||||||||||||||||  || ||||| |||||||| || |  ||||    
T  7925260 agaagaatcaaacgaccaccgaaagataggaaccgacttgnccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgac 7925359  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  |||||||||||||||   | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  7925360 gcggatcgcccccaatcgagagccccaaatagagaaacgagattttacctactttgcagcccaacacagaagccgcttctgacaaccacgaatcattaat 7925459  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  7925460 attaacccctaccagagaactcttatgaaaattaactttca 7925500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 17700325 - 17700451
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||| || | | ||| ||||||||||| ||||| ||||||||||||||  || ||| ||||||||||  | |||||||||| || ||||||||    
T  17700325 agacaggaagcgcagtcaagacagatttgagaagtatcaatcgaccaccaaaggaatggtacctactatgccaaccaaacaatctagactttatacgatt 17700424  T
Q  180 aacaacaggctcccaaaataataaccg 206  Q
    ||||| |||||||||||||||||||||    
T  17700425 aacaataggctcccaaaataataaccg 17700451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 465
Target Start/End: Complemental strand, 13878474 - 13878365
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    ||||| |||| ||| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  13878474 aaagcgcgaacatttgcccagcttttcttccctatcaagagcgtatcatccacaaattgtaaatgggacaccactaccggattagcaccccccacactgt 13878375  T
Q  456 atcccgtgaa 465  Q
    | ||||||||    
T  13878374 accccgtgaa 13878365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 462
Target Start/End: Original strand, 20825453 - 20825559
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| || | ||||||||| || || ||||||| ||| ||||| ||||    
T  20825453 aaagcacgaacattcgcccaacttttattccctatcaagagcgtgtcatcagcaaactgaagatgagacaccacgacaggattagtgccacccacactgt 20825552  T
Q  456 atcccgt 462  Q
    | |||||    
T  20825553 aacccgt 20825559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 5585780 - 5585881
Alignment:
Q  74 gagcacagacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaat 173  Q
    ||||| ||||||||||  || |||||||||| || ||||||| |||||||||||| | |||| | ||||  || ||||||| ||||||||||| ||||||    
T  5585780 gagcatagacaggaagtgcagttaggacggacttcagaagaaccaagcgaccaccgatggagggaaaccagctttgccaaacagacaatctagttttaat 5585879  T
Q  174 ac 175  Q
    ||    
T  5585880 ac 5585881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 16375375 - 16375284
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||| ||||    ||| ||||||||||||||| || |||| ||| |||||    
T  16375375 gatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacctaacagtctagatttaatacggttcacaataggttccca 16375284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 41664344 - 41664261
Alignment:
Q  367 attagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccac 450  Q
    ||||||||| ||||||||||| || |  ||||| |||||| |||| |||||||||||||| || |||||||| |||| ||||||    
T  41664344 attagcccagcttttattcccaataagaagcgtatcatcagcaaactgtaaatgagacacaaccactggattcgcgcaccccac 41664261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 4987337 - 4987246
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||||| ||| || |||||||| || ||||| ||||||| ||||   |||| ||||||||| | |||||| |||||||| |||||    
T  4987337 gatttgagaagaaccaaacggccaccaaaagaaaggaaacgactattccaacctgacagtctagattttacacgattcacaacagggtccca 4987246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 14345153 - 14345099
Alignment:
Q  142 cgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| |||  |||||||||||||||||| |||||||||| ||| |||||||    
T  14345153 cgactatgacaaccagacaatctagatttaatgcgattaacaataggatcccaaa 14345099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 13091488 - 13091549
Alignment:
Q  362 cgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgaga 423  Q
    ||||||||||||||||||   | ||| ||||| |  ||||||||||||||||||||||||||    
T  13091488 cgaatattagcccaacttcgttccccaatcaacaaggtgtcatcaacaaattgtaaatgaga 13091549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 43247516 - 43247455
Alignment:
Q  362 cgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgaga 423  Q
    |||| ||||||||||||||| || |||| ||| || || |||||| ||||||||||||||||    
T  43247516 cgaacattagcccaacttttcttacctaacaacagagtatcatcagcaaattgtaaatgaga 43247455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 12135143 - 12135183
Alignment:
Q  157 gacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  12135143 gacaatctagatttaatacgattcacaataggatcccaaaa 12135183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 80 - 349
Target Start/End: Complemental strand, 33515488 - 33515219
Alignment:
Q  80 agacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||  || | |||||||||||| |||||||||  |||| |||||| || ||||||||||||||||||  ||||||||||||||| ||||||||    
T  33515488 agacaggaagtgcagtcaggacggatttgcgaagaatcagacgactaccaaaagaaaggaaccgactatgccaaccagacaatctagattttatacgatt 33515389  T
Q  180 aacaacaggctcccaaaataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaa 279  Q
    |||| || ||||||||||||||||||| || ||||| || |||||| |||  |||||||||||||||  || |||||||| ||||||||||| || ||||    
T  33515388 aacagcatgctcccaaaataataaccggcgtggatcacccccaatcggaaggcccaaatagagaaacgaaattttacccactttgcaacccaacatagaa 33515289  T
Q  280 gccgcttcagacagccaagaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||| |||||||    
T  33515288 gcctcttcagacaaccaagaggcattaatattcacccccactagagagcttttatggaaatttactttca 33515219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 12646389 - 12646522
Alignment:
Q  74 gagcacagacaggaagcacatttaggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaat 173  Q
    ||||| ||||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  12646389 gagcatagacaggaagcgcagttaggacggatttgagaagaattaggcgaccaccaaaggagaggaaccgactatgccaacttgacaatctagatttaat 12646488  T
Q  174 acgattaacaacaggctcccaaaataataaccga 207  Q
    |||||||||||||| |||||||||||||| ||||    
T  12646489 acgattaacaacagactcccaaaataatagccga 12646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 97 - 317
Target Start/End: Original strand, 28253591 - 28253811
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| |||||||| || | |||||||||||| ||||| ||||||||| | |||  ||||| |||||||||||| |||||||||||||| | |||||    
T  28253591 aggacggacttgagaaggattaggcgaccaccaaaagagagaaaccgactacgacaaccagacagtctagatttaattcgattaacaacaggtttccaaa 28253690  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    ||||||||||||| |  || || |||||| |||  |||||||||||||||   ||| |||||| ||| ||||||| |||  |||||||||||| || |||    
T  28253691 ataataaccgacgagagtcacccccaatcggaaggcccaaatagagaaacgacactgtacccaatttacaacccaacactaaagccgcttcagtcaacca 28253790  T
Q  297 agaggcattaatattgacccc 317  Q
    ||| ||||||||||| |||||    
T  28253791 agaagcattaatattaacccc 28253811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 356 - 510
Target Start/End: Complemental strand, 33515180 - 33515026
Alignment:
Q  356 aaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacactactactggattagcgccccccaccctgt 455  Q
    |||||||||| ||||||||||||||| |||||| ||| ||||||||||||  ||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  33515180 aaagcacgaacattagcccaacttttcttccctgtcaggagcgtgtcatccgcaaattgtaaatgagacaccactactggattatcgccccccacactgt 33515081  T
Q  456 atcccgtgaatatatttgcttccaccaaagctttcttcaacacattgagtccttc 510  Q
    | |||||||| | |||||| || ||||| |||||| |||| ||||| || |||||    
T  33515080 aacccgtgaaaacatttgcatcaaccaaggctttcatcaagacattcagaccttc 33515026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 13416560 - 13416649
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    ||||||||||||||||| ||||| || || |||||||| |||||| |||||| ||||||||| ||||| ||||| ||||| |||||||||    
T  13416560 agaagaatcaagcgacctccaaatgaaagaaaccgactttgccaattagacagtctagattttatacggttaaccacaggttcccaaaat 13416649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 13551444 - 13551541
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||| ||||||||||||| ||||||||||||||| || || |||||||||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  13551444 aggacagatttgagaagaaccaagcgaccaccaaaagatagaaaccgactattccaacctgacagtctagatttaatacgattcacaataggttccca 13551541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 2207086 - 2206983
Alignment:
Q  111 aagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgc 210  Q
    ||||||||| ||||| |||||||| || |||||||| |||||| | |||| ||||||||||||||| | ||| ||||||||||||||  | || ||||||    
T  2207086 aagaatcaaacgacctccaaaggaaagaaaccgactttgccaactggacagtctagatttaatacggtgaaccacaggctcccaaaaagacaagcgacgc 2206987  T
Q  211 ggat 214  Q
    ||||    
T  2206986 ggat 2206983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 25380666 - 25380571
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaag-gagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||| |||||| || |||||  ||||| || ||||||  |||| | |||| |||||||||||||||||| |||| ||| ||||||||    
T  25380666 gatttgagaagaaccaagcggccgccaaaaagagagaaaacgactaatccaacttgacagtctagatttaatacgattcacaataggttcccaaaa 25380571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 9667991 - 9667929
Alignment:
Q  358 agcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatg 420  Q
    |||||||| ||||||||||||||| ||||||| ||| || || |||||| |||||| ||||||    
T  9667991 agcacgaacattagcccaacttttcttccctaacaacagagtatcatcagcaaattataaatg 9667929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 9668264 - 9668184
Alignment:
Q  117 caagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    |||||||||||| || ||||| |||||  ||| ||||   ||||||||||||||||| | ||| |||||||| ||||||||    
T  9668264 caagcgaccaccgaacgagagaaaccggttattccaacctgacaatctagatttaattctattcacaacagggtcccaaaa 9668184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 13551729 - 13551793
Alignment:
Q  350 gcccgtaaagcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattg 414  Q
    |||| ||||||||||| |||||||||||||||| | |||| ||| |  ||||||||| |||||||    
T  13551729 gcccttaaagcacgaacattagcccaacttttagttcctaacaacaaagtgtcatcagcaaattg 13551793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 28399822 - 28399746
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||| || |||||||| || |||||||| ||||| |||| ||||||||||   |||| |||||||||||| |||||    
T  28399822 gattttaggagaatcaaacgtccaccaaaagagagaaacctactatgccaacccgacagtctagatttaatgcgatt 28399746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 109 - 349
Target Start/End: Original strand, 6051477 - 6051717
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |  ||||    
T  6051477 agaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgac 6051576  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  6051577 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaat 6051676  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| |||||||| |||||||||||||    
T  6051677 attaacccctaccagagaacttttatgaaaattaactttca 6051717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 35541896 - 35542148
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||| ||||||  || ||||||| |||||||||| || |||||||| |||||||    
T  35541896 aggacggactttagaagaatcaaacggccacctaaggaaagaaaccgactttgccaaccagccaatctatatttaatacggttcacaacaggttcccaaa 35541995  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  ||||| |||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| |||||| |||||||| |||| |||    
T  35541996 acaaaagtcgacgaggatcgccgccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagatgccgcttctgacaacca 35542095  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  |||||||||||||||| |||||||| || ||||| |||||||||||||    
T  35542096 cgaatcattaatattgacccctaccagagaactcttatgaaaattaactttca 35542148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 120 - 349
Target Start/End: Complemental strand, 47622332 - 47622103
Alignment:
Q  120 gcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgacgcggatcgcct 219  Q
    |||||||||||| ||||| ||||||||| |||||  |||||||||||||||||| |||||||||||||| ||||||||||||||| | || || || ||     
T  47622332 gcgaccaccaaaagagagaaaccgactacgccaaccagacaatctagatttaattcgattaacaacaggttcccaaaataataactgtcgagggtcaccc 47622233  T
Q  220 ccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatattgaccccaa 319  Q
    |||||| |||  |||||||| || |||   | | |||||| ||| || |||| ||| |||| |||||||  || |||||| ||||||||||| ||||| |    
T  47622232 ccaatcggaaggcccaaataaaggaacgacattgtacccaatttacagcccaacactgaagtcgcttcaatcaaccaagaagcattaatattaaccccta 47622133  T
Q  320 ccagagagcttttatggaaattaactttca 349  Q
     ||  || ||||||||  ||||||||||||    
T  47622132 tcaacgaacttttatgataattaactttca 47622103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 5497948 - 5498045
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||| ||||||||||||| ||||||||||||||| || || |||||||||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  5497948 aggacagatttgagaagaaccaagcgaccaccaaaagatagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccca 5498045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 48072698 - 48072607
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  48072698 gatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccca 48072607  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 32352584 - 32352493
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    |||||||| |||| ||||||||||||||| ||||| |||||||||| ||||   |||| |||||||||||||| ||| |||| ||| |||||    
T  32352584 gatttgagtagaaccaagcgaccaccaaaagagagaaaccgactattccaacccgacagtctagatttaatacaattcacaataggttccca 32352493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 25504264 - 25504179
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacagg 188  Q
    ||||||||||||| ||| || |||||||| |||||||| ||||||| ||||   |||| ||||||||| |||||||| ||||||||    
T  25504264 gatttgagaagaaccaaacggccaccaaaagagaggaaacgactattccaacctgacagtctagattttatacgattcacaacagg 25504179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 39431168 - 39431249
Alignment:
Q  117 caagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    |||||||||||| || ||||| |||||||||| ||||   ||||||||||||||||| | ||| |||||||| |||||||||    
T  39431168 caagcgaccaccgaacgagagaaaccgactattccaacctgacaatctagatttaattctattcacaacagggtcccaaaat 39431249  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 51052743 - 51052820
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaata 174  Q
    |||||||| || || |||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||    
T  51052743 aggacggactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaata 51052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 20796542 - 20796623
Alignment:
Q  117 caagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaat 198  Q
    |||||||||||| || ||||| || ||||||| ||||   ||||||||||||||||| | ||| |||||||| |||||||||    
T  20796542 caagcgaccaccgaacgagagaaatcgactattccaacctgacaatctagatttaattctattcacaacagggtcccaaaat 20796623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 39431445 - 39431503
Alignment:
Q  362 cgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatg 420  Q
    |||| ||||||||||||||| ||||||| ||| || || |||||| |||||||||||||    
T  39431445 cgaacattagcccaacttttcttccctaacaacagagtatcatcagcaaattgtaaatg 39431503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 20796819 - 20796880
Alignment:
Q  362 cgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgaga 423  Q
    |||| ||||||||| ||||| ||||||| ||| || || ||||||||||||| |||||||||    
T  20796819 cgaacattagcccagcttttcttccctaacaacagagtatcatcaacaaattataaatgaga 20796880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 19171265 - 19171356
Alignment:
Q  359 gcacgaatattagcccaacttttattccctatcaagagcgtgtcatcaacaaattgtaaatgagacac-tactactggattagcgccccccac 450  Q
    ||||||| ||||||||||||||| ||||| || | ||| || |||| | ||||||| | ||||||||| ||| |||| |||||||||||||||    
T  19171265 gcacgaacattagcccaacttttcttcccaatgaggagtgtatcataagcaaattgaatatgagacacatac-actgaattagcgccccccac 19171356  T

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Target: scaffold0034 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 109 - 349
Target Start/End: Complemental strand, 105109 - 104869
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |  ||||    
T  105109 agaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgac 105010  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  105009 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaat 104910  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  104909 attaacccctaccagagaactcttatgaaaattaactttca 104869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 109 - 349
Target Start/End: Complemental strand, 4937394 - 4937154
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||||||| |||||||| || || ||||||||||| ||||||  |||||||||||||||||||||||  || ||||| |||||||| || |  ||||    
T  4937394 agaagaatcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaatacgatccaccacaggttcccaaaacaaaagacgac 4937295  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    |||||||||| ||||||   |  ||||||||||||||| | | |||||| | |||||| |||| ||||||||||||||| |||| ||| ||  |||||||    
T  4937294 gcggatcgcccccaatcgagagccccaaatagagaaacgggattttacctactttgcaccccaacacagaagccgcttctgacaaccacgaatcattaat 4937195  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||||||| || ||||| |||||||||||||    
T  4937194 attaacccctaccagagaactcttatgaaaattaactttca 4937154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 29968836 - 29969088
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || ||||||||||| || ||||| ||||| ||||||||||| ||||||  || |||||||||||||||||| || |||||||| |||||||    
T  29968836 aggacggactttagaagaatcaaacggccaccgaaggaaaggaaccgactttgccaaccagccaatctagatttaatacggttcacaacaggttcccaaa 29968935  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  ||||| ||| | || ||||||   |  ||||||||||||||||| | |||||| | |||||| |||| ||||||||||||||| |||| |||    
T  29968936 acaaaagtcgacgtggaccacccccaatcgagagccccaaatagagaaacaggattttacctactttgcaccccaacacagaagccgcttctgacaacca 29969035  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  |||||||||||||||| |||||||| || ||||| |||||||||||||    
T  29969036 cgaatcattaatattgacccctaccagagaactcttatgaaaattaactttca 29969088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 109 - 349
Target Start/End: Original strand, 17721509 - 17721749
Alignment:
Q  109 agaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaataataaccgac 208  Q
    ||||||| ||| ||||||||||| || ||||||||||| ||||||  ||||||||||  |||||| |||||||||||||| |||||||| ||||| ||||    
T  17721509 agaagaaccaaacgaccaccaaaagaaaggaaccgactttgccaaccagacaatctatttttaatgcgattaacaacaggttcccaaaacaataatcgac 17721608  T
Q  209 gcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaat 308  Q
    ||||||| || ||||||   |  ||||||||||||||| | | |||||| | ||||||||||| ||| ||||||||||| |||| ||| ||  || ||||    
T  17721609 gcggatcacccccaatcgagagccccaaatagagaaacgggattttacctactttgcaacccaacacggaagccgcttctgacaaccacgaaccagtaat 17721708  T
Q  309 attgaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| ||||| |||| ||| || ||||| |||||||||||||    
T  17721709 attaacccctaccaaagaactcttatgaaaattaactttca 17721749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 45993444 - 45993535
Alignment:
Q  103 gatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||||||||| ||| ||||||||||| |||||||| ||||||| ||||   |||| |||||| || |||||||| |||||||| |||||    
T  45993444 gatttgagaagaaccaaacgaccaccaaaagagaggaaacgactattccaacctgacagtctagactttatacgattcacaacagggtccca 45993535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 13440927 - 13441017
Alignment:
Q  104 atttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctccca 194  Q
    ||||||| |||| ||||||||||||| | ||||| |||||||||| ||||   |||| |||||||||||||||||| |||| ||| |||||    
T  13440927 atttgagtagaaccaagcgaccaccacaagagagaaaccgactattccaacccgacagtctagatttaatacgattcacaataggttccca 13441017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 45164811 - 45164725
Alignment:
Q  111 aagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||| |||||||| || |||||||| |||||| |||||  ||||||||||||| | ||||| ||| | ||||||||    
T  45164811 aagaatcaagcgacctccaaaggaaagaaaccgactttgccaactagacggtctagatttaatagggttaaccacatgttcccaaaa 45164725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 43572421 - 43572503
Alignment:
Q  115 atcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaaa 197  Q
    ||||||||||||||||| ||||| ||||| |||| |||    ||||||||||||||||||||||| || ||| | ||||||||    
T  43572421 atcaagcgaccaccaaacgagagaaaccggctattccaccccgacaatctagatttaatacgattcacgacatgatcccaaaa 43572503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 41340429 - 41340493
Alignment:
Q  115 atcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgatt 179  Q
    ||||||||||||||||||||||| || || ||||  |||   ||||||||||||||||| |||||    
T  41340429 atcaagcgaccaccaaaggagagaaatcggctatttcaacccgacaatctagatttaatgcgatt 41340493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 97 - 349
Target Start/End: Original strand, 4114 - 4366
Alignment:
Q  97 aggacggatttgagaagaatcaagcgaccaccaaaggagaggaaccgactatgccaaatagacaatctagatttaatacgattaacaacaggctcccaaa 196  Q
    |||||||| || ||||||||||| |||||||| ||||| ||||||| ||| ||| ||  |||||| |||||||||||||| || |||||||| |||||||    
T  4114 aggacggactttagaagaatcaaacgaccaccgaaggaaaggaaccaactttgcgaaccagacaacctagatttaatacggttcacaacaggttcccaaa 4213  T
Q  197 ataataaccgacgcggatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagcca 296  Q
    | || |  ||||| ||||| || ||||||   |  ||||||||||||||| ||| |||||| | |||||| |||| ||||||||||||||| |||| |||    
T  4214 acaaaagtcgacgtggatcacccccaatcgagagccccaaatagagaaacggaattttacctactttgcaccccaacacagaagccgcttccgacaacca 4313  T
Q  297 agaggcattaatattgaccccaaccagagagcttttatggaaattaactttca 349  Q
     ||  | |||||||| ||||| |||||||| || |||||||||||||||||||    
T  4314 cgaatcgttaatattaacccctaccagagaactcttatggaaattaactttca 4366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 212 - 349
Target Start/End: Original strand, 585 - 722
Alignment:
Q  212 gatcgcctccaatcagaatacccaaatagagaaacagaactttacccattttgcaacccagcacagaagccgcttcagacagccaagaggcattaatatt 311  Q
    ||||||| |||||| ||| |||||||||||| |||   ||||||| || ||||||||| | |||| |||| | ||||| || |||||| ||||| |||||    
T  585 gatcgcccccaatcggaagacccaaatagaggaacgacactttacgcactttgcaacctaacacaaaagctgtttcagccaaccaagaagcattgatatt 684  T
Q  312 gaccccaaccagagagcttttatggaaattaactttca 349  Q
    ||| |||||| ||||||||||||||||||| |||||||    
T  685 gacaccaacccgagagcttttatggaaatttactttca 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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