View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_13 (Length: 511)
Name: NF0831_low_13
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 18)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 10978926 - 10979400
Alignment:
| Q |
8 |
ccaataatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10978926 |
ccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttcta |
10979025 |
T |
|
| Q |
108 |
ttataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979026 |
ttataatcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcca |
10979125 |
T |
|
| Q |
208 |
acactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979126 |
acactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtc |
10979225 |
T |
|
| Q |
308 |
attttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctc |
407 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979226 |
attttcaatcgttacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctc |
10979325 |
T |
|
| Q |
408 |
cttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10979326 |
cttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
10979400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 10903036 - 10903505
Alignment:
| Q |
13 |
aatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattata |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
10903036 |
aatatgatatgtaattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattatt |
10903135 |
T |
|
| Q |
113 |
atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact |
212 |
Q |
| |
|
|||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
10903136 |
atcatctccaacgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaact |
10903235 |
T |
|
| Q |
213 |
ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt |
312 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10903236 |
ttatccattgaaggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcatttt |
10903335 |
T |
|
| Q |
313 |
caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttct |
412 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||| |
|
|
| T |
10903336 |
caatagttacttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagttcttccttct |
10903435 |
T |
|
| Q |
413 |
acttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
10903436 |
acttgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatatcattccaacattt |
10903505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 21 - 482
Target Start/End: Original strand, 10914204 - 10914665
Alignment:
| Q |
21 |
atgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctc |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| || ||| || |||||||| |
|
|
| T |
10914204 |
atgtaattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctc |
10914303 |
T |
|
| Q |
121 |
caacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccat |
220 |
Q |
| |
|
||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10914304 |
caacatctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccat |
10914403 |
T |
|
| Q |
221 |
tgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtc |
320 |
Q |
| |
|
||||||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
10914404 |
tgaaggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagtt |
10914503 |
T |
|
| Q |
321 |
acttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgcca |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||| ||||||| |
|
|
| T |
10914504 |
acttcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaattcttccttctgcttgcca |
10914603 |
T |
|
| Q |
421 |
tctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10914604 |
tctccattaacaacatcccaaagctatatacatcagctttgtgagatattgtgccgacattt |
10914665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 11010507 - 11010966
Alignment:
| Q |
13 |
aatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattata |
112 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| |||||||||| ||| | || |
|
|
| T |
11010507 |
aatatgatatgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgta |
11010605 |
T |
|
| Q |
113 |
atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact |
212 |
Q |
| |
|
| |||||| ||| ||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
11010606 |
a---------acatccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaact |
11010696 |
T |
|
| Q |
213 |
ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt |
312 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||||||||| | || ||||||||||||||||| || | |
|
|
| T |
11010697 |
ttatccattgaaggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttct |
11010796 |
T |
|
| Q |
313 |
caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttct |
412 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
11010797 |
caattgttacttcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttct |
11010896 |
T |
|
| Q |
413 |
acttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11010897 |
acttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
11010966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 55 - 482
Target Start/End: Complemental strand, 11029070 - 11028641
Alignment:
| Q |
55 |
ttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaa |
154 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||| ||| |||||||||| ||| ||| ||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
11029070 |
ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa |
11028971 |
T |
|
| Q |
155 |
gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacac |
254 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||| |
|
|
| T |
11028970 |
gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac |
11028871 |
T |
|
| Q |
255 |
cacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcg--tcacttcccttccatcatgtaatcgatcatatat |
352 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |
|
|
| T |
11028870 |
cacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaat |
11028771 |
T |
|
| Q |
353 |
ccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatataca |
452 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| ||||||| | ||| |||||||| | || |||||||| |||||||||||||| ||||| ||| |
|
|
| T |
11028770 |
ccagaaagggaaataaatttggctagattgttcagccaatgcattctaattcttccttctattcgcaatctccattaacaacatcccaaagctatagaca |
11028671 |
T |
|
| Q |
453 |
tcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11028670 |
tcagctttgtaagatattgtgccaacattt |
11028641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 35 - 482
Target Start/End: Complemental strand, 11005503 - 11005056
Alignment:
| Q |
35 |
agaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctact |
134 |
Q |
| |
|
|||||||| | |||||||||||||| || || ||||| | | ||||||| || | ||| ||| || ||||| ||| | |||||| || |||||| || |
|
|
| T |
11005503 |
agaaccaacacgagatcaggttggttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagct |
11005404 |
T |
|
| Q |
135 |
ggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgt |
234 |
Q |
| |
|
||| |||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| || |
|
|
| T |
11005403 |
ggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcac |
11005304 |
T |
|
| Q |
235 |
cgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatc |
334 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
11005303 |
ctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatc |
11005204 |
T |
|
| Q |
335 |
atgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaac |
434 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11005203 |
atgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttccttctacttgccatctccatcaacaac |
11005104 |
T |
|
| Q |
435 |
atcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||| |||||| |
|
|
| T |
11005103 |
atcccaaagctatagacatcagctttgtgagatattgtgccgacattt |
11005056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 10932571 - 10932870
Alignment:
| Q |
8 |
ccaataatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttcta |
107 |
Q |
| |
|
|||| ||||| | ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||| |
|
|
| T |
10932571 |
ccaacaatattaaatgtacttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgcta |
10932670 |
T |
|
| Q |
108 |
ttataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc- |
206 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10932671 |
ctactattatctccaacatcctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcct |
10932770 |
T |
|
| Q |
207 |
aacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgt |
306 |
Q |
| |
|
|| ||||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10932771 |
aaaactttttccattgaaggacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt |
10932870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 140 - 482
Target Start/End: Original strand, 11032915 - 11033257
Alignment:
| Q |
140 |
atcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggt |
239 |
Q |
| |
|
|||||||| | || ||| |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| || ||| |
|
|
| T |
11032915 |
atcttgtacataatagtcaggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggt |
11033014 |
T |
|
| Q |
240 |
tttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgta |
339 |
Q |
| |
|
|| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| ||| |||| |||||||||||| |||| |
|
|
| T |
11033015 |
ttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgta |
11033114 |
T |
|
| Q |
340 |
atcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatccc |
439 |
Q |
| |
|
| ||||||| | |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
11033115 |
actgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaagttcttccttctatttgccatctccatcaacaacatccc |
11033214 |
T |
|
| Q |
440 |
aaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
11033215 |
aaaactataaacatcagctttgtaagatattgtgccgacattt |
11033257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 113 - 404
Target Start/End: Complemental strand, 10994109 - 10993818
Alignment:
| Q |
113 |
atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact |
212 |
Q |
| |
|
|||||||| |||||| ||| ||||| ||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | |||| |
|
|
| T |
10994109 |
atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact |
10994010 |
T |
|
| Q |
213 |
ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt |
312 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||||||| | |
|
|
| T |
10994009 |
ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattct |
10993910 |
T |
|
| Q |
313 |
caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttc |
404 |
Q |
| |
|
|||| || ||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10993909 |
caattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttc |
10993818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 158 - 482
Target Start/End: Original strand, 11007480 - 11007804
Alignment:
| Q |
158 |
aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccac |
257 |
Q |
| |
|
||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| || ||||| | || ||||||||| |
|
|
| T |
11007480 |
aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac |
11007579 |
T |
|
| Q |
258 |
aaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa |
357 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || || |||| ||| |||| ||||| || | ||| |||||||| ||||| ||||||| | ||||| |
|
|
| T |
11007580 |
aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa |
11007679 |
T |
|
| Q |
358 |
aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc |
457 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| | ||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
11007680 |
aagggaaataaacctggctagattgaccagccaatacatccaagttcttccttctatttgccatctccattaacaacatcccaaaactataaacatcagc |
11007779 |
T |
|
| Q |
458 |
tttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
11007780 |
tttgtaagatatcgtgccgacattt |
11007804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 302 - 482
Target Start/End: Original strand, 10974142 - 10974322
Alignment:
| Q |
302 |
tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag |
401 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
10974142 |
tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa |
10974241 |
T |
|
| Q |
402 |
ttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
10974242 |
ttcttccttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatattt |
10974322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 103 - 316
Target Start/End: Original strand, 10901350 - 10901563
Alignment:
| Q |
103 |
ttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcat |
202 |
Q |
| |
|
||||| ||| |||||||| || |||||| ||||| |||||||| || ||| ||||||||| ||||| |||||||| ||||||||||||| | ||||||| |
|
|
| T |
10901350 |
ttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcat |
10901449 |
T |
|
| Q |
203 |
ctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatct |
302 |
Q |
| |
|
||| | ||||||||||||||||||||| || ||||||||||| ||||||| || |||||||||||| |||||||||||||||| ||||| | |||| |
|
|
| T |
10901450 |
ctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatct |
10901549 |
T |
|
| Q |
303 |
gtgtcattttcaat |
316 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
10901550 |
gtgtcattctcaat |
10901563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 384 - 482
Target Start/End: Original strand, 10901567 - 10901665
Alignment:
| Q |
384 |
tcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacattt |
482 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||| |
|
|
| T |
10901567 |
tcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacattt |
10901665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 463
Target Start/End: Complemental strand, 9082712 - 9082592
Alignment:
| Q |
343 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
442 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||| || ||||| ||| | | |||| ||| |||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
9082712 |
gatcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatcccaaa |
9082613 |
T |
|
| Q |
443 |
actatatacatcagctttgta |
463 |
Q |
| |
|
|||||| |||||||| ||||| |
|
|
| T |
9082612 |
actataaacatcagccttgta |
9082592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 484
Target Start/End: Complemental strand, 9433010 - 9432869
Alignment:
| Q |
343 |
gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa |
442 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || |||||||| || |||||| || || ||||||||||| || || ||||| | ||| ||||| |
|
|
| T |
9433010 |
gatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattccaaa |
9432911 |
T |
|
| Q |
443 |
actatatacatcagctttgtaagatattgtgccaacattttg |
484 |
Q |
| |
|
|||||| ||||| || |||| |||||| | |||| |||||| |
|
|
| T |
9432910 |
actatacacatcggccttgtgtgatattctcccaatattttg |
9432869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 8999663 - 8999723
Alignment:
| Q |
406 |
tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaaga |
466 |
Q |
| |
|
||||| ||| ||||||||||||||| | ||||||||| ||||| |||||||| || ||||| |
|
|
| T |
8999663 |
tccttttacctgccatctccatcaaaagcatcccaaagctataaacatcagccttataaga |
8999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 460
Target Start/End: Complemental strand, 9096909 - 9096865
Alignment:
| Q |
416 |
tgccatctccatcaacaacatcccaaaactatatacatcagcttt |
460 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||| ||||||||||| |
|
|
| T |
9096909 |
tgccatctccatcaaaagcatcccaaagctataaacatcagcttt |
9096865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 466
Target Start/End: Original strand, 9384225 - 9384285
Alignment:
| Q |
406 |
tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaaga |
466 |
Q |
| |
|
||||| ||| |||||| |||||||| | ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
9384225 |
tccttttacctgccatttccatcaaaagcattccaaagctatatacatcagccttgtaaga |
9384285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 9159598 - 9159654
Alignment:
| Q |
412 |
tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagata |
468 |
Q |
| |
|
|||||||||| |||||||| | ||| ||||||||||| |||||||| ||||| |||| |
|
|
| T |
9159598 |
tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgata |
9159654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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