View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_2 (Length: 747)
Name: NF0831_low_2
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 8356127 - 8355782
Alignment:
| Q |
1 |
tgatgataaatttgagattaaacaaggtaacattttttccactgttgaacatctgaatgcactttgtgtattgttaatgtgtaaagaaaaatatattatt |
100 |
Q |
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| T |
8356127 |
tgatgataaatttgagattaaacaaggtcacattttttccactgttgaacatctgaatgcactttgtgtattgttaatgtgtaaagaaaaatatattatt |
8356028 |
T |
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| Q |
101 |
cttgcctcattttaattatcattgctgaattagtttagcatcaaccagaactaaattgtcttctgattttctgtgcaacttttgataaatggattatatt |
200 |
Q |
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| T |
8356027 |
cttgcctcattttaattatcattgctgaattagtttagcatcaaccagaactaaattgtcttctgattttctgtgcaacttttgataaatggattatatt |
8355928 |
T |
|
| Q |
201 |
atttttatagaatttataagatggtagatcaactaaacttaaatagatcacttctccacatcagcatttcccgcttgcctgcctacatgggannnnnnnc |
300 |
Q |
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| T |
8355927 |
atttttgtagaatttataagatggtagatcaactaaactgaaatagatcacttctccacatcagcatttcccgcttgcctgcctacatgggatttttttc |
8355828 |
T |
|
| Q |
301 |
tttccgtcaccctattagttactttcaaattcaaaaaagttgtttt |
346 |
Q |
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| T |
8355827 |
gttccgtcaccctattagttactttcaaattcaaaaaagttgtttt |
8355782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 342 - 589
Target Start/End: Complemental strand, 8355761 - 8355517
Alignment:
| Q |
342 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
441 |
Q |
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| T |
8355761 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
8355662 |
T |
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| Q |
442 |
tccccgattaaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
541 |
Q |
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| T |
8355661 |
tccccgattaaaattctctatccaaacacacttttagtgtagtttttattc---tcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
8355565 |
T |
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| Q |
542 |
cataacaaagtcactatctttccagactagtggtggcgatctggaaca |
589 |
Q |
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| T |
8355564 |
cataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 450 - 618
Target Start/End: Original strand, 8482621 - 8482788
Alignment:
| Q |
450 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
549 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
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| Q |
550 |
agtcac-tatctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgt |
618 |
Q |
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| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgt |
8482788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
479 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
547 |
Q |
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||||||||||||||| ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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