View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_20 (Length: 470)
Name: NF0831_low_20
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 72 - 365
Target Start/End: Complemental strand, 47286796 - 47286503
Alignment:
| Q |
72 |
cgacattgccacaaatacattccgatccttaactgtacaaacagacacttggtgttcctcaggttctgttctctcaaacggtacattagtccaaaccggt |
171 |
Q |
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| T |
47286796 |
cgacattgccacaaatacattccgatccttaactgtacaaacagacacttggtgttcctcaggttctgttctctcaaacggtacattagtccaaaccggt |
47286697 |
T |
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| Q |
172 |
ggtttcaacgatggtgagcgtcgaattcgaatgttcacaccatgtttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagat |
271 |
Q |
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| T |
47286696 |
ggtttcaacgatggtgagcgtcgaattcgaatgttcacaccatgtttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagat |
47286597 |
T |
|
| Q |
272 |
ggtatgcaacaaatcaaatactaccagataatcgcattataattattggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
365 |
Q |
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| T |
47286596 |
ggtatgcaacaaatcaaatactaccagataatcgcattataattattggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
47286503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 47286973 - 47286913
Alignment:
| Q |
6 |
acaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcata |
66 |
Q |
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| T |
47286973 |
acaaccaaccattggcatttcagctatgcacatgcaactttcacacaacaataaaatcata |
47286913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 411 - 461
Target Start/End: Complemental strand, 47286457 - 47286407
Alignment:
| Q |
411 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatct |
461 |
Q |
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| T |
47286457 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatct |
47286407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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