View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_22 (Length: 435)
Name: NF0831_low_22
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 63 - 390
Target Start/End: Original strand, 31664920 - 31665247
Alignment:
| Q |
63 |
tgaaactatatggttggtactttgatcatcaactacatcaaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttggggt |
162 |
Q |
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| T |
31664920 |
tgaaactatatggttggtactttgatcatcaactacatcaaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttggggt |
31665019 |
T |
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| Q |
163 |
ggtggaatcgttggttctaagtgttcttctttcaccgagtacatataattcattctcaaatatgttatgtctaattagaattaatcaaattagtttatta |
262 |
Q |
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| T |
31665020 |
ggtggaatcgttggttctaagtgttcttctttcaccgagtacatataattcattctcaaatatgttatgtctaattagaattaatcaaattagtttatta |
31665119 |
T |
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| Q |
263 |
aagtcattagagggattttataaatacatgcatggatagaagaaaatagtattactagtgagtgatcaataattgaatagaaggttctagatatattagg |
362 |
Q |
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| T |
31665120 |
aagtcattagagggattttataaatacatgcatggatagaagaaaatagtattaccagtgagtgatcaataattgaatagaaggttctagatatattagg |
31665219 |
T |
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| Q |
363 |
atgaaagtgattgagcaccttcctcgtg |
390 |
Q |
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| T |
31665220 |
atgaaagtgattgagcaccttcctcgtg |
31665247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31664883 - 31664838
Alignment:
| Q |
1 |
acacatgccttctccaatcttctccttcccagatacttcaagcaca |
46 |
Q |
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| T |
31664883 |
acacatgccttctccaatcttctccttcccagatacttcaaacaca |
31664838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 46489113 - 46489185
Alignment:
| Q |
86 |
gatcatcaactacatcaaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttg |
158 |
Q |
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|||||||||||| |||| |||||||||||||||||||| | || | | |||||| ||||||||| ||||||| |
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| T |
46489113 |
gatcatcaactatatcatatgtttttgtgaggaatggtggaggaccattttcatgaagtccttcccttggttg |
46489185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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