View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_24 (Length: 434)
Name: NF0831_low_24
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 31664859 - 31665247
Alignment:
| Q |
1 |
ggagaagattggagaaggcatgtgtatcccaaaccacaaaacttgtgccactcctgttccatgaaactatatggttggtactttgatcatcaactacatc |
100 |
Q |
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| T |
31664859 |
ggagaagattggagaaggcatgtgtatcccaaaccacaaaacttgtgccactcctgttccatgaaactatatggttggtactttgatcatcaactacatc |
31664958 |
T |
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| Q |
101 |
aaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttggggtggtggaatcgttggttctaagtgttcttctttcaccgag |
200 |
Q |
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| T |
31664959 |
aaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttggggtggtggaatcgttggttctaagtgttcttctttcaccgag |
31665058 |
T |
|
| Q |
201 |
tacatataattcattctcaaatatgttatgtctaattagaattaatcaaattagtttattaaagtcattagagggattttataaatacatgcatggatag |
300 |
Q |
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| T |
31665059 |
tacatataattcattctcaaatatgttatgtctaattagaattaatcaaattagtttattaaagtcattagagggattttataaatacatgcatggatag |
31665158 |
T |
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| Q |
301 |
aagaaaatagtattactagtgagtgatcaataattgaatagaaggttctagatatattaggatgaaagtgattgagcaccttcctcgtg |
389 |
Q |
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| T |
31665159 |
aagaaaatagtattaccagtgagtgatcaataattgaatagaaggttctagatatattaggatgaaagtgattgagcaccttcctcgtg |
31665247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 46489113 - 46489185
Alignment:
| Q |
85 |
gatcatcaactacatcaaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttg |
157 |
Q |
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|||||||||||| |||| |||||||||||||||||||| | || | | |||||| ||||||||| ||||||| |
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| T |
46489113 |
gatcatcaactatatcatatgtttttgtgaggaatggtggaggaccattttcatgaagtccttcccttggttg |
46489185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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