View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_25 (Length: 433)
Name: NF0831_low_25
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 10530382 - 10530119
Alignment:
| Q |
9 |
gattatactaaaatctaatgtttattagagcaatattttaatgattgtgagtaataatcgaccgtggaccagagttcgctctagaagccgacgttgtcta |
108 |
Q |
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| T |
10530382 |
gattatactaaaatctaatgtttattagagcaatattttaatgattgtgagtaataatcgaccgtggaccacagtttgctctagaagccgacgctgtcta |
10530283 |
T |
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| Q |
109 |
tttgttcttactgactcgacnnnnnnnnnnccttttgtgttcattgatggatttgagtcgatgtgttatcccatacttgtttagttggttaaaacttgtg |
208 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10530282 |
tttgttcttactgactcgactttttttt--ccttttctgttcattgatggatttgagtcgatgtgttatcccatacttgtttagttggttaaaacttgtg |
10530185 |
T |
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| Q |
209 |
cctatccttttctcttgaatggttcttcatgattaaaaccggtaagcatgcagtacataggtgtaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10530184 |
cctatccttttctcttgaatggttcttcatgattaaaaccggtaagcatgcagtacataggtgtaa |
10530119 |
T |
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