View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_30 (Length: 416)
Name: NF0831_low_30
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 29 - 401
Target Start/End: Original strand, 32493712 - 32494088
Alignment:
| Q |
29 |
agttattgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatttgct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32493712 |
agttattgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatttgct |
32493811 |
T |
|
| Q |
129 |
gtaagtttaagttaaattgaaatttaatatacaaaaatatcataatat----atacaaacaatgacatatttaaatttataatgatgcaggtgggtggtc |
224 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32493812 |
gtaagtttaagttaatttgaaatttaatatacaaaaatatcataatatatatatacaaacaatgacatatttacatttataatgatgcaggtgggtggtc |
32493911 |
T |
|
| Q |
225 |
cgtcatggacggtaaaactcggaagaagagactctaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacggatgatctaacaactct |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32493912 |
cgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacggatgatctaacaactct |
32494011 |
T |
|
| Q |
325 |
tatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32494012 |
tatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactgacccat |
32494088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 401
Target Start/End: Original strand, 28595500 - 28595868
Alignment:
| Q |
29 |
agttattgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatttgct |
128 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||| |
|
|
| T |
28595500 |
agttattgataaagcaaaagctgatgtagagaaagtatgtcctggagttgtgtcttgtgctgacattgtagcaatagcggcacgtgatgcatcatttgct |
28595599 |
T |
|
| Q |
129 |
gtaagtttaagttaaattgaaatttaat----atacaaaaatatcataatatatacaaacaatgacatatttaaatttataatgatgcaggtgggtggtc |
224 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
28595600 |
gtaagtttaagttaatttaaaatttaattaatatacaacaatatcataatatat---------gacatatttacatttataatcatgcaggtgggtggtc |
28595690 |
T |
|
| Q |
225 |
cgtcatggacggtaaaactcggaagaagagactctaccgttgctagcaaaa-gtcaggccaattcagaccttccaaaatttacggatgatctaacaactc |
323 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28595691 |
catcatggacggtaaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaatttacagatgatctaacaactc |
28595790 |
T |
|
| Q |
324 |
ttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccat |
401 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28595791 |
taatatcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccat |
28595868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 384
Target Start/End: Complemental strand, 28592312 - 28592135
Alignment:
| Q |
207 |
tgatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactctaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttac |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||| || ||||||||| ||||||| | |||||||| |||||| |
|
|
| T |
28592312 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttac |
28592213 |
T |
|
| Q |
307 |
ggatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaa |
384 |
Q |
| |
|
||| ||||| |||||||||||| | ||||||| || ||| ||| || | || ||| ||||||||| |||||||||| |
|
|
| T |
28592212 |
ggacgatcttacaactcttatatctcattttaataaaaaaaatctcacccccagagacatggttactctatctggtaa |
28592135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 28592488 - 28592384
Alignment:
| Q |
33 |
attgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatttgctgtaa |
132 |
Q |
| |
|
||||||||||||||| || | || |||||| | || || |||||||||||||| || ||||| |||| || ||||| |||||||||||||||||||||| |
|
|
| T |
28592488 |
attgataaagcaaaatctgaggttgagaaaatttgtcccggagttgtgtcttgcgcggacatactagctgtggcagcacgtgatgcatcatttgctgtaa |
28592389 |
T |
|
| Q |
133 |
gttta |
137 |
Q |
| |
|
||||| |
|
|
| T |
28592388 |
gttta |
28592384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 338
Target Start/End: Complemental strand, 28587203 - 28587083
Alignment:
| Q |
218 |
ggtggtccgtcatggacggtaaaactcggaagaagagactctaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacggatgatctaa |
317 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||| ||||||| | |||||||| |||||| || ||||| | |
|
|
| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
|
| Q |
318 |
caactcttatagcccatttta |
338 |
Q |
| |
|
||||||||||| | ||||||| |
|
|
| T |
28587103 |
caactcttatatctcatttta |
28587083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 28587302 - 28587211
Alignment:
| Q |
33 |
attgataaagcaaaagctaatgtggagaaagtatgccctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatt |
124 |
Q |
| |
|
||||||||||||||| || | || |||||||| || || |||||||||||||| || ||||| | || || ||||| |||||||||||||| |
|
|
| T |
28587302 |
attgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcgcggacatacttgctgtggcagcacgtgatgcatcatt |
28587211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 47049388 - 47049334
Alignment:
| Q |
64 |
tatgccctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgc |
118 |
Q |
| |
|
|||||||||| ||||| || |||||||||||| ||||| | |||||||||||||| |
|
|
| T |
47049388 |
tatgccctggtgttgtatcatgtgctgacatcctagcattggcagctcgtgatgc |
47049334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2331 times since January 2019
Visitors: 6161