View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_31 (Length: 405)

Name: NF0831_low_31
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_31
NF0831_low_31
[»] chr4 (4 HSPs)
chr4 (29-391)||(7630840-7631202)
chr4 (29-161)||(37397083-37397215)
chr4 (186-359)||(29551147-29551320)
chr4 (29-150)||(29552075-29552196)
[»] chr1 (2 HSPs)
chr1 (29-153)||(48181398-48181522)
chr1 (29-148)||(35988843-35988962)
[»] chr5 (4 HSPs)
chr5 (39-148)||(27949696-27949805)
chr5 (90-161)||(15812528-15812599)
chr5 (29-161)||(36519703-36519835)
chr5 (90-161)||(15728872-15728943)
[»] scaffold0048 (1 HSPs)
scaffold0048 (46-161)||(54824-54939)
[»] chr6 (3 HSPs)
chr6 (259-342)||(33553395-33553478)
chr6 (186-218)||(32419509-32419541)
chr6 (186-218)||(32425350-32425382)
[»] chr8 (1 HSPs)
chr8 (259-349)||(21462551-21462641)
[»] chr2 (2 HSPs)
chr2 (46-141)||(35096289-35096384)
chr2 (302-368)||(32121495-32121561)
[»] chr3 (1 HSPs)
chr3 (285-313)||(3732956-3732984)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Complemental strand, 7631202 - 7630840
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631202 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 7631103  T
Q  129 tgaatttcttcaacatatctgacaaaagaagcgccctacccggttagtcttttaatatcatacaaaaaagttactctaatattttagggaccggatacag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631102 tgaatttcttcaacatatctgacaaaagaagcgccctacccggttagtcttttaatatcatacaaaaaagttactctaatattttagggaccggatacag 7631003  T
Q  229 tcaacaatgatggtgtcagaatgtgaattggcaccatctgtcaggagttaagggttgtttgtctgggtgtcaggttgaccatcaaagtattattttccct 328  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7631002 tcaacagtgatggtgtcaaaatgtgaattggcaccatctgtcaggagttaagggttgtttgtctgggtgtcaggttgaccatcaaagtattattttccat 7630903  T
Q  329 atagaggaagcaaaccttacctaggaaacaagccttaccttgcccctccatcttcttgtaccc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7630902 atagaggaagcaaaccttacctaggaaacaagccttaccttgcccctccatcttcttgtaccc 7630840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 37397215 - 37397083
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||||| ||||||||||| |||||||||||| ||||| | ||||||| || ||||| || ||||||||| ||||  |||  | |||||||||||||    
T  37397215 aaacataacagatcatggatcaactaaattaacttattcgtcttgttccttaagcagagccctgatctcttcacagttcctgaaccagaacaaacttttc 37397116  T
Q  129 tgaatttcttcaacatatctgacaaaagaagcg 161  Q
    |||||||||||||||||| | || |||||||||    
T  37397115 tgaatttcttcaacatatttaaccaaagaagcg 37397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 359
Target Start/End: Complemental strand, 29551320 - 29551147
Alignment:
Q  186 tcatacaaaaaagttactctaatattttagggaccggat--acagtcaacaatgatggtgtcagaatgtgaattggcaccatctgtcaggagttaagggt 283  Q
    ||||||||||| |||||| ||||||||||||||||| ||  || |||    |||| |||| |||| ||  ||||| |||||||| |||||  |||||||     
T  29551320 tcatacaaaaatgttactttaatattttagggaccgtatgaacggtccgtgatgacggtgccagactgcaaattgacaccatctatcagg--ttaaggga 29551223  T
Q  284 tgtttgtctgggtgtcaggttgaccatcaaagtattattttccctatagaggaagcaaaccttacctaggaaacaa 359  Q
    ||||||||||||||||| ||||||||||||||| | ||||  |||| ||||||||||||||||||  |||||||||    
T  29551222 tgtttgtctgggtgtcaagttgaccatcaaagtctcatttatcctagagaggaagcaaaccttactcaggaaacaa 29551147  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 29552196 - 29552075
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||||| || || |||||||| |||||| |||||| | ||||||||  |||||| | ||||| ||||||| |||  | || |||| ||||||||||    
T  29552196 aaacataacagattattgatcagctcaattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagccggagcaaacttttc 29552097  T
Q  129 tgaatttcttcaacatatctga 150  Q
    ||| ||||||||| | ||||||    
T  29552096 tgattttcttcaataaatctga 29552075  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 48181522 - 48181398
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||||||||||   |||||||||| ||| |||||||| |||||| || || ||||| || |||||||| || ||  || ||| || ||||||||||    
T  48181522 aaacataacatatcacatatcagctaaactaatttcttcgtctggttcattcagcagagccctgatctcttcgtaattcatgggtcagatcaaacttttc 48181423  T
Q  129 tgaatttcttcaacatatctgacaa 153  Q
    ||||||||||||| | |||||||||    
T  48181422 tgaatttcttcaataaatctgacaa 48181398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 35988962 - 35988843
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||| | ||||||||||| ||||| |||  |||| || |||| | | ||| |||||| | |||||||  || ||  |||| | || ||||||||||    
T  35988962 aaacataatagatcatggatcaactaaactaatgtctttgtctggtccttctagcagagctatgatctctttgtaattactgagccagatcaaacttttc 35988863  T
Q  129 tgaatttcttcaacatatct 148  Q
    ||||||||||||||||||||    
T  35988862 tgaatttcttcaacatatct 35988843  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 27949696 - 27949805
Alignment:
Q  39 tatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttctt 138  Q
    |||||||||||| ||||| |||||||||| | |||| |||  || ||||| || |||||||| ||||| ||| |||||| ||||||||| ||||||| ||    
T  27949696 tatcatggatcacctaaactaacttcttcctctggtccctccagcagagccctgatctcttcgtagttcttgggtcggatcaaacttttttgaatttttt 27949795  T
Q  139 caacatatct 148  Q
    ||||| ||||    
T  27949796 caacagatct 27949805  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 15812599 - 15812528
Alignment:
Q  90 ctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacatatctgacaaaagaagcg 161  Q
    ||||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||||||||||||| || ||||||    
T  15812599 ctaatctcttcgtagttcttgggtcggatcaaacttttatgaatttgttcaacatatctgaccaacgaagcg 15812528  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 36519835 - 36519703
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||| | |||| | |||||||||| ||| |||||||| | ||||||  |||||||| |   ||||||| |||||  |  || ||| ||||||||||    
T  36519835 aaacataatagatcacgaatcagctaaactaatttcttcgtctagttcctccagtagagcccagttctcttcgtagttcctaggttggatcaaacttttc 36519736  T
Q  129 tgaatttcttcaacatatctgacaaaagaagcg 161  Q
    ||||||||||||||| || |||| || ||||||    
T  36519735 tgaatttcttcaacagatttgaccaacgaagcg 36519703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 15728943 - 15728872
Alignment:
Q  90 ctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacatatctgacaaaagaagcg 161  Q
    ||||||||||| ||||| ||  |||||| ||||||||| ||||||| |||||||||| |||| || ||||||    
T  15728943 ctaatctcttcgtagttcttcggtcggatcaaacttttatgaatttgttcaacatatatgaccaacgaagcg 15728872  T

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Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 54824 - 54939
Alignment:
Q  46 gatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacata 145  Q
    ||||| |||||||||  ||||||| |||| | || | ||| || || |||||||| |||||  || |||||| ||||||||||||||||| |||||||||    
T  54824 gatcatctaaattaatgtcttcgtgtggtgcattcattagtgccctgatctcttcgtagttcctgcgtcggatcaaacttttctgaatttgttcaacata 54923  T
Q  146 tctgacaaaagaagcg 161  Q
    |||||| || ||||||    
T  54924 tctgaccaatgaagcg 54939  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 33553478 - 33553395
Alignment:
Q  259 gcaccatctgtcaggagttaagggttgtttgtctgggtgtcaggttgaccatcaaagtattattttccctatagaggaagcaaa 342  Q
    |||||||||| |||| ||||||  || ||||||| ||||||||||||||||||||||| | |||| || || | ||||||||||    
T  33553478 gcaccatctgccaggggttaagaattctttgtctaggtgtcaggttgaccatcaaagtctcatttgccttagaaaggaagcaaa 33553395  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 32419541 - 32419509
Alignment:
Q  186 tcatacaaaaaagttactctaatattttaggga 218  Q
    |||||||||||||||||||||||||||||||||    
T  32419541 tcatacaaaaaagttactctaatattttaggga 32419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 32425382 - 32425350
Alignment:
Q  186 tcatacaaaaaagttactctaatattttaggga 218  Q
    |||||||||||||||||||||||||||||||||    
T  32425382 tcatacaaaaaagttactctaatattttaggga 32425350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 21462551 - 21462641
Alignment:
Q  259 gcaccatctgtcaggagttaagggttgtttgtctgggtgtcaggttgaccatcaaagtattattttccctatagaggaagcaaaccttacc 349  Q
    ||||||||  || |||||||| | || |||||||||||||| |||||||||||||||| |  |||  |||| ||||| |||||||||||||    
T  21462551 gcaccatccctctggagttaatgtttatttgtctgggtgtcgggttgaccatcaaagtctcctttgtcctagagagggagcaaaccttacc 21462641  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 35096384 - 35096289
Alignment:
Q  46 gatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaa 141  Q
    ||||| ||||| ||| || ||||| |||||||| ||| ||||| || ||||| || ||||| |||  ||| | |||||||||||||||||||||||    
T  35096384 gatcaactaaactaattttttcgtctggttcctctagcagagccctgatctcctcgtagttcttgtatcgaatcaaacttttctgaatttcttcaa 35096289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 368
Target Start/End: Complemental strand, 32121561 - 32121495
Alignment:
Q  302 gttgaccatcaaagtattattttccctatagaggaagcaaaccttacctaggaaacaagccttacct 368  Q
    ||||||||||||| | |  ||| ||||| ||||||||||||||||||| |||||||||  |||||||    
T  32121561 gttgaccatcaaaatctcttttaccctagagaggaagcaaaccttacccaggaaacaaatcttacct 32121495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 3732984 - 3732956
Alignment:
Q  285 gtttgtctgggtgtcaggttgaccatcaa 313  Q
    |||||||||||||||||||||||||||||    
T  3732984 gtttgtctgggtgtcaggttgaccatcaa 3732956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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