View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_34 (Length: 394)

Name: NF0831_low_34
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_34
NF0831_low_34
[»] chr8 (1 HSPs)
chr8 (29-382)||(39857480-39857832)
[»] chr5 (1 HSPs)
chr5 (187-257)||(19905089-19905160)
[»] chr4 (2 HSPs)
chr4 (307-343)||(32833154-32833190)
chr4 (212-258)||(32833160-32833207)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 382
Target Start/End: Original strand, 39857480 - 39857832
Alignment:
Q  29 aaaatattaattcattatgctatacatttgtatgtgtaattaggattatcta--gactcacaaatgttcacttgtgctaaattcaaattttaatgacaca 126  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||     
T  39857480 aaaatattaattcattatgctatacttttgtatgtgtaattaggattatctatagactcacaaatgttcacttgtgctaaattcaaattttaatgacacc 39857579  T
Q  127 tattcttaaatttctgcttacgtgtcaggataacaacattaacatttgtaatgattactagattgtataacagctattattttaagtttgatttgtaagc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39857580 tattcttaaatttctgcttacgtgtcaggataacaacattaacatttgtaatgattactagattgtataacagctattattttaagtttgatttgtaagc 39857679  T
Q  227 ttggttcacaaataaccgtaacgaagtctaacaattttctagttagttaaaaccaagtggcttttatgtttgacttgtaagcttcacaaattactgtaac 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||    
T  39857680 ttggttcacaaataaccgtaacgaagtctaacaattttctagttagttaaaaccaagtggcttttatgtttgacttgtaagcttcacaaat---tggaac 39857776  T
Q  327 cgaagtctaaccgttttctagagagttagttagttaaactatagcaactacatatt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39857777 cgaagtctaaccgttttctagagagttagttagttaaactatagcaactacatatt 39857832  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 19905089 - 19905160
Alignment:
Q  187 gattgtataacagctattattttaagtttgatttgtaagcttggttcacaaataaccgtaac-gaagtctaa 257  Q
    |||| ||| ||| ||||| |||||||||||||||||| ||||| ||||| |||||||||||| |||||||||    
T  19905089 gattttatgacaactattcttttaagtttgatttgtacgcttgcttcacgaataaccgtaactgaagtctaa 19905160  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 32833190 - 32833154
Alignment:
Q  307 gcttcacaaattactgtaaccgaagtctaaccgtttt 343  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32833190 gcttcacaaataactgtaaccgaagtctaaccgtttt 32833154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 32833207 - 32833160
Alignment:
Q  212 gtttgatttgtaagcttggttcacaaataaccgtaa-cgaagtctaac 258  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||    
T  32833207 gtttgatttgtaagcttgcttcacaaataactgtaaccgaagtctaac 32833160  T

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