View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_35 (Length: 393)
Name: NF0831_low_35
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 383
Target Start/End: Original strand, 14459016 - 14459371
Alignment:
| Q |
30 |
gataacacttttttacatgaaaa-tat-gtcacactattgtagcaggggagaggattcaaattcatctatgagtgatgtgttagtactgtttatgatttt |
127 |
Q |
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| T |
14459016 |
gataacactttttcacatgaaaaatattgtcacactattgtagcaggggagaggattcaaattcatctatgagtgatgtgttagtactgtttatgatttt |
14459115 |
T |
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| Q |
128 |
atgtaatgatgaaatgaaataggatatataaacttaggaataattcaatgcagtaaatacctcgaatattttattgcaccattcctcggactcattgttg |
227 |
Q |
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| T |
14459116 |
atgtaatgatgaaatgaaataggatatataaacttaggaataattcaatgcagtaattacctcgaatattttattgcaccattcctcggactcattgttg |
14459215 |
T |
|
| Q |
228 |
agtaaatgacgcaaaatttgttgatgatgtgttggttctgacataagttttcccttaccttcattatcttttattgctttcttatatgcatgccacctta |
327 |
Q |
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| T |
14459216 |
agtaaatgacgcaaaatttgttgatgatgtgttggttctgacataagttttcccttaccttcattatcttttattgctttcttatatgcatgccacctta |
14459315 |
T |
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| Q |
328 |
tatgattctctgacttgtagaattttgcatagtagaaaaattgtacttcacctatg |
383 |
Q |
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| T |
14459316 |
tatgattctctgacttgtagaattttgcatagtagaaaaattgtacttcacctatg |
14459371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 14467997 - 14468059
Alignment:
| Q |
30 |
gataacacttttttacatgaaaata---tgtcacactattgtagcaggggagaggattcaaat |
89 |
Q |
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||||||||||||||||||||||||| ||||||||| ||| | || |||||||||||||||| |
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| T |
14467997 |
gataacacttttttacatgaaaatattttgtcacactgttgcaccatgggagaggattcaaat |
14468059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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