View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_38 (Length: 382)
Name: NF0831_low_38
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 51151042 - 51150878
Alignment:
| Q |
13 |
aatattagacacaatttaataaagtaattccaataattaatttaaataatctcaaaaactacaaaaccatacgtacgtaccacactcaatcccgtcatta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
51151042 |
aatattagacacaatttaataaagtaattccaataattagtttaaataatctcaaaaacaacaaaaaaatacgtacgtaccacgctcaatcccgtcatta |
51150943 |
T |
|
| Q |
113 |
ccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51150942 |
ccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatc |
51150878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 51163343 - 51163179
Alignment:
| Q |
13 |
aatattagacacaatttaataaagtaattccaataattaatttaaataatctcaaaaactacaaaaccatacgtacgtaccacactcaatcccgtcatta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
51163343 |
aatattagacacaatttaataaagtaattccaataattagtttaaataatctcaaaaacaacaaaataatacgtacgtaccacgctcaatcccgtcatta |
51163244 |
T |
|
| Q |
113 |
ccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatc |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51163243 |
ccagtataactggtttctcgccaatggatccaaaacgaaatctccttccttcgttattagccatc |
51163179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2245 times since January 2019
Visitors: 6160