View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0831_low_39 (Length: 382)
Name: NF0831_low_39
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 51150992 - 51150878
Alignment:
| Q |
63 |
ctcaaaaactacaaaaccatacgtacgtaccacactcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttcct |
162 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51150992 |
ctcaaaaacaacaaaaaaatacgtacgtaccacgctcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttcct |
51150893 |
T |
|
| Q |
163 |
tcgttattagccatc |
177 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
51150892 |
tcgttattagccatc |
51150878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 51163293 - 51163179
Alignment:
| Q |
63 |
ctcaaaaactacaaaaccatacgtacgtaccacactcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttcct |
162 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51163293 |
ctcaaaaacaacaaaataatacgtacgtaccacgctcaatcccgtcattaccagtataactggtttctcgccaatggatccaaaacgaaatctccttcct |
51163194 |
T |
|
| Q |
163 |
tcgttattagccatc |
177 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
51163193 |
tcgttattagccatc |
51163179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 438 times since January 2019
Visitors: 6128