View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_42 (Length: 372)
Name: NF0831_low_42
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 89 - 361
Target Start/End: Original strand, 4243604 - 4243876
Alignment:
| Q |
89 |
ccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgtaa |
188 |
Q |
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| T |
4243604 |
ccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgtaa |
4243703 |
T |
|
| Q |
189 |
gtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatgtaac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243704 |
gtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatgtaac |
4243803 |
T |
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| Q |
289 |
gagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctct |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243804 |
gagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctct |
4243876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 94 - 361
Target Start/End: Original strand, 6186665 - 6186932
Alignment:
| Q |
94 |
atcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgtaagttta |
193 |
Q |
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|||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| |||||||||| |||||||| || ||||| || ||| |
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| T |
6186665 |
atcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgttagctta |
6186764 |
T |
|
| Q |
194 |
ttcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagca |
293 |
Q |
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|||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
6186765 |
ttcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgttcataccgaccgatgtaacaagca |
6186864 |
T |
|
| Q |
294 |
tttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctct |
361 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
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| T |
6186865 |
tttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctct |
6186932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 38358431 - 38358526
Alignment:
| Q |
245 |
ctcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaagga |
340 |
Q |
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||||||||||||||||||| |||||| | || || ||||| || ||||| | ||||||||||| |||||||||| ||||| | |||||||||| |
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| T |
38358431 |
ctcatcatttgtccccatgatgtgtttttgcccacagatgttacaagcatctgagcatatccatccacaacttttgcgccggacaacaaaaaagga |
38358526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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