View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_43 (Length: 356)
Name: NF0831_low_43
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 27420310 - 27420485
Alignment:
| Q |
86 |
tgttgcaatggtattgtgttggaaaccaccgccgaccaattaattccacaattataatg-ctgagtttttggaatataaaacgaatgaataacccaattt |
184 |
Q |
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| T |
27420310 |
tgttgcaatggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatggctgagtttttggaatataaaacgaatgaataacccaattt |
27420409 |
T |
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| Q |
185 |
gcaagaaatccagctcacnnnnnnnnctttctaaatcttcaatttgat-ctttaaaaggggtgacgaaacccagta |
259 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27420410 |
gcaagaaatccagctcacttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagta |
27420485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 44607517 - 44607692
Alignment:
| Q |
86 |
tgttgcaatggtattgtgttggaaaccaccgccgaccaattaattccacaattataatg-ctgagtttttggaatataaaacgaatgaataacccaattt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44607517 |
tgttgcaatggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatgactgagtttttggaatataaaacgaatgaataacccaattt |
44607616 |
T |
|
| Q |
185 |
gcaagaaatccagctcacnnnnnnnnctttctaaatcttcaatttgat-ctttaaaaggggtgacgaaacccagta |
259 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44607617 |
gcaagaaatccagctcacttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagta |
44607692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 18712355 - 18712189
Alignment:
| Q |
94 |
tggtattgtgttggaaaccaccgccgaccaattaattccacaattataatg-ctgagtttttggaatataaaacgaatgaataacccaatttgcaagaaa |
192 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18712355 |
tggtattgtgttggaaaccatcaccgaccaattaattccacaattatcatggctgagtttttggaatataaaacgaatgaataacccaatttgcaacaaa |
18712256 |
T |
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| Q |
193 |
tccagctcac-nnnnnnnnctttctaaatcttcaatttgat-ctttaaaaggggtgacgaaacccag |
257 |
Q |
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|||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18712255 |
tccaactcactttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccag |
18712189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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