View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_46 (Length: 338)
Name: NF0831_low_46
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 39141798 - 39142098
Alignment:
| Q |
30 |
gtagattcacaataagaaagtcaagggatttggaagtatggtgtagatatttaggagtctagtacctttgatcgccgccactattttcatcgactttttc |
129 |
Q |
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| T |
39141798 |
gtagagtcacaataagaaagtcaagggacttggaagtatggtgtagatatttaggagtcaagtacctttgatcgccgccactattttcatcgactttttc |
39141897 |
T |
|
| Q |
130 |
ttatgtagttgatgtgaatgtgaatgcaaccnnnnnnnnnnnnnnnnnataagagatgtgattacatacttgtaatttccactattctgttgaattatat |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39141898 |
ttatgtagttgatgtgaatgtgaatgcaaccttttttttttt------ataagagatgtgattacatacttgtaatttccactattctgttgaattatat |
39141991 |
T |
|
| Q |
230 |
tttctttatcttagattgtatttctcatttcaagtcggaaatgttatttacactttaaacttgttaaacattgtt----atagttaaaattagttgatat |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39141992 |
tttctttatcttagattgtatttctcatttcaagtcggaaatgttatttacactttaaacttgttaaacattgtttaagatagttaaaattagttgatat |
39142091 |
T |
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| Q |
326 |
tcttgga |
332 |
Q |
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| ||||| |
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| T |
39142092 |
ttttgga |
39142098 |
T |
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