View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_48 (Length: 337)
Name: NF0831_low_48
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_48 |
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| [»] scaffold0813 (1 HSPs) |
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Alignment Details
Target: scaffold0813 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 101 - 323
Target Start/End: Complemental strand, 3950 - 3728
Alignment:
| Q |
101 |
ttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactca |
200 |
Q |
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| T |
3950 |
ttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactca |
3851 |
T |
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| Q |
201 |
tccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctcaacaaactcaaacatcagacccttgtctaccatgt |
300 |
Q |
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| T |
3850 |
tccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctaaacaaactcaaacatcagacccttgtctaccatgt |
3751 |
T |
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| Q |
301 |
tcggtatgtactcgtgacctatg |
323 |
Q |
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| T |
3750 |
tcggtatgtactcgtggcctatg |
3728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 101 - 323
Target Start/End: Original strand, 6618032 - 6618254
Alignment:
| Q |
101 |
ttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactca |
200 |
Q |
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| T |
6618032 |
ttttgacccctggaataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactca |
6618131 |
T |
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| Q |
201 |
tccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctcaacaaactcaaacatcagacccttgtctaccatgt |
300 |
Q |
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| T |
6618132 |
tccaacacgatcttcatctccataggaagtaggtggaaactgtccatctgtctatgccacctctaaacaaactcaaacatcagacccttgtctaccatgt |
6618231 |
T |
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| Q |
301 |
tcggtatgtactcgtgacctatg |
323 |
Q |
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| T |
6618232 |
tcggtatgtactcgtggcctatg |
6618254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 147 - 322
Target Start/End: Original strand, 6526525 - 6526697
Alignment:
| Q |
147 |
agatatgatatgaaggcactagtgtttggtagatgtagtaagcatgaaaactcatccaacacgatcttcatctccataggaagtaggtggaaactgtcca |
246 |
Q |
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| T |
6526525 |
agatatgagacgaaagcaccagtgtttggtagatgtggtacccatgat---tcatacaacatgatcttcatctccacaggcagtgggtggaaactgtccg |
6526621 |
T |
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| Q |
247 |
tctgtctatgccacctctcaacaaactcaaacatcagacccttgtctaccatgttcggtatgtactcgtgacctat |
322 |
Q |
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| T |
6526622 |
tctctttatgacgtctctcaacaaactcagacatgagacatatgtctaccatgttctgtatatactcgtgtcctat |
6526697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 6773137 - 6773070
Alignment:
| Q |
115 |
ataaataaggccacaccatgtttcaggataccagatatgatatgaaggcactagtgtttggtagatgt |
182 |
Q |
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| T |
6773137 |
ataaataagaccacaccatgtttctacatacgaaatatgatatgaaggcactagtgtttggtagatgt |
6773070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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