View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_51 (Length: 324)
Name: NF0831_low_51
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 886639 - 886869
Alignment:
| Q |
1 |
cccagaagggatccttgggcttggatttggtaaggccagcatattgtcccagcttaaatctcaaggcttgattaaaaatgtgataggtcattgcatnnnn |
100 |
Q |
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| T |
886639 |
cccagaagggatccttgggcttgggtatggtaaggccagcatattgtcccagcttaaatctcaaggtttgattcaaaatgtggtaggtcattgcataaaa |
886738 |
T |
|
| Q |
101 |
nnnggaggagggtacatattctttggagataaattcattcccaaacctcctacagaaattagttggacacctatcgtaactccctcaaagttagtaaatg |
200 |
Q |
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| T |
886739 |
aagagaggagggtacttattctttggagataaattcattcccaaacctcttacgcagattagttggacacctatcataattccctcaaagttagtaaatg |
886838 |
T |
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| Q |
201 |
atttaatatatagatgttgccactcatacat |
231 |
Q |
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| T |
886839 |
atttaatatatagatgttgccactcatacat |
886869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 31875702 - 31875615
Alignment:
| Q |
6 |
aagggatccttgggcttggatttggtaaggccagcatattgtcccagcttaaatctcaaggcttgattaaaaatgtgataggtcattg |
93 |
Q |
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||||||| ||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
31875702 |
aagggattcttgggcttgggcatggtgagaccagcatattgtcccagcttaaatctaaaggcttgattaaaaatgtggtaggtcattg |
31875615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 31660558 - 31660662
Alignment:
| Q |
104 |
ggaggagggtacatattctttggagataaattcattcccaaacctcctacagaaattagttggacacctatcgtaactccctcaaagttagtaaatgatt |
203 |
Q |
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| T |
31660558 |
ggaggaggttatttatactttggagataacttcattcccaaacctcctacccagattagttggacacctatgcagagtcccgcaaagtaagtaaatggtt |
31660657 |
T |
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| Q |
204 |
taata |
208 |
Q |
| |
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||||| |
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| T |
31660658 |
taata |
31660662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 31935794 - 31935724
Alignment:
| Q |
104 |
ggaggagggtacatattctttggagataaattcattcccaaacctcctacagaaattagttggacacctat |
174 |
Q |
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|||||||| || ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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| T |
31935794 |
ggaggaggttatttatactttggagataacttcattcccaaacctcctacccagattagttggacacctat |
31935724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 31974031 - 31973961
Alignment:
| Q |
104 |
ggaggagggtacatattctttggagataaattcattcccaaacctcctacagaaattagttggacacctat |
174 |
Q |
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|||||||| || ||| |||||||||||| ||||||||||||||||||||| | |||||||||| |||||| |
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| T |
31974031 |
ggaggaggttatttatactttggagataacttcattcccaaacctcctacacagattagttggatacctat |
31973961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 31935829 - 31935796
Alignment:
| Q |
33 |
aggccagcatattgtcccagcttaaatctcaagg |
66 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
31935829 |
aggccagcatattgtcccagcttaaatctaaagg |
31935796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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