View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_52 (Length: 320)
Name: NF0831_low_52
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38076703 - 38076465
Alignment:
| Q |
1 |
cttttgctaaacaaaattacccttagcaattcnnnnnnnnnnncaaaacttaaatataaatatacatcaaaattataggaaattcgacaactaactattt |
100 |
Q |
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| T |
38076703 |
cttttgctaaacaaaattacccttagcaattcatttttattt-caaaacttaaatataaatatacatcaaaattataggaaattcgacaactaactattt |
38076605 |
T |
|
| Q |
101 |
tttagttgannnnnnnnnnnnctgctagaacccttaataatctaatatttgcaagactgaagtcagagatgtaaaaaatttaagtctaatattttgaaag |
200 |
Q |
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| T |
38076604 |
tttagttgatttttttttt--ctgctagaacccttaataatctaatatttgcaagactgaagtcagagatgtaaaagatttaagtctaatattttgaaag |
38076507 |
T |
|
| Q |
201 |
tctggtatgagttattagtctatttaaaaatctatttcatat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38076506 |
tctggtatgagttattagtctatttaaaaatctatttcatat |
38076465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 42323385 - 42323433
Alignment:
| Q |
194 |
ttgaaagtctggtatgagttattagtctatttaaaaatctatttcatat |
242 |
Q |
| |
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|||||||||| |||||| || ||||||||||||||| | |||||||||| |
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| T |
42323385 |
ttgaaagtctagtatgactttttagtctatttaaaagtgtatttcatat |
42323433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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