View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_54 (Length: 309)
Name: NF0831_low_54
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 299
Target Start/End: Original strand, 9431806 - 9432018
Alignment:
| Q |
87 |
aaataaatggatcaaaatcaagacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
186 |
Q |
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| T |
9431806 |
aaataaatggatcaaaatcacgacacgatttctccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattttcaacagcagctc |
9431905 |
T |
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| Q |
187 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9431906 |
aatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaattttacattttagtttcatctggttatctgaat |
9432005 |
T |
|
| Q |
287 |
ctataatcctatg |
299 |
Q |
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||||||||||||| |
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| T |
9432006 |
ctataatcctatg |
9432018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 55 - 299
Target Start/End: Original strand, 9452764 - 9453005
Alignment:
| Q |
55 |
gaacttaaggtctaaaagaaacacattttccaaaataaatggatcaaaatcaagacacgatttctccaaatcgcaccatgaattttgacgaaccttcaac |
154 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| || || |||||||||||||||||| |
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| T |
9452764 |
gaacttaaggtctaaaataa-cacattttccaaaataaatggatcaaaatcacgacacaatttcttcaaatcgcatcaagatttttgacgaaccttcaac |
9452862 |
T |
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| Q |
155 |
atcaattttgagtaaattttcaacagcagctcaatgagtaagtaaatgctaagttaacaaagaagtaattctaggaattttcgctacaattttcattaat |
254 |
Q |
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|||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| |
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| T |
9452863 |
atcaattt-gagtaacttttcaacagcagctcaatgagtatgaaaatgctaagttaacaaagcaataattctaggaattttctcaacaattttcattaat |
9452961 |
T |
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| Q |
255 |
tttacattttagtttcatctggttatctgaatctataatcctatg |
299 |
Q |
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| T |
9452962 |
tttacatgtt-gtttgatatggttatctgaatgtataatcctatg |
9453005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 5611675 - 5611728
Alignment:
| Q |
120 |
ccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattt |
173 |
Q |
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||||||| |||| || |||||||||| |||||||||||||||||||| ||||| |
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| T |
5611675 |
ccaaatcataccacgatttttgacgaagcttcaacatcaattttgagtcaattt |
5611728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 21156962 - 21157015
Alignment:
| Q |
120 |
ccaaatcgcaccatgaattttgacgaaccttcaacatcaattttgagtaaattt |
173 |
Q |
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||||||| |||| || |||||||||| |||||||||||||||||||| ||||| |
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|
| T |
21156962 |
ccaaatcataccacgatttttgacgaagcttcaacatcaattttgagtcaattt |
21157015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 28074030 - 28073998
Alignment:
| Q |
148 |
cttcaacatcaattttgagtaaattttcaacag |
180 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
28074030 |
cttcaacatcaattttgagtcaattttcaacag |
28073998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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