View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_55 (Length: 308)
Name: NF0831_low_55
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 37264319 - 37264586
Alignment:
| Q |
13 |
aatatgacatgctaggaacatatttacaaagatcaacaattcttctaacaataaccggttttttcctcacaattatttacgtattaagtgaaccaatcct |
112 |
Q |
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| T |
37264319 |
aatatggcatgctaggaacatatttacaaagatcaacaattcttctaacaataaccggttttttcctcacaattatttacgtattaagtgaaccaatcct |
37264418 |
T |
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| Q |
113 |
agtattcattggacaatcaccaagaatagcttctgcagcagcactttttgtgtatggacttatcccacaaatatttgcttatgcagtaaattttccaatc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37264419 |
agtattcattggacaatcaccaagaatagcttctgcagcagcactttttgtgtatggacttatcccacaaatatttgcttatgcagtaaatttcccaatc |
37264518 |
T |
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| Q |
213 |
caaaaatttcttcaagcacaaagtatagttctaccaagtgcatacatttcagcaggaactttagtttt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37264519 |
caaaaatttcttcaagcacaaagtatagttctaccaagtgcatacatttcagcaggaactttagtttt |
37264586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 16945526 - 16945272
Alignment:
| Q |
13 |
aatatgacatgctaggaacatatttacaaagatcaacaattcttctaacaataaccggttttttcctcacaattatttacgtattaagtgaaccaatcct |
112 |
Q |
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||||||| ||| |||| | |||||| |||||||||||| | ||||| |||||| ||||||| | | ||||| || ||| |||| |||||||| | |
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| T |
16945526 |
aatatgaaatgttaggcatatatttgcaaagatcaacagtgcttctcacaatagccggtttaattttaacaataatatacatattctccgaaccaatttt |
16945427 |
T |
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| Q |
113 |
agtattcattggacaatcaccaagaatagcttctgcagcagcactttttgtgtatggacttatcccacaaatatttgcttatgcagtaaattttccaatc |
212 |
Q |
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| T |
16945426 |
aatatttctaggagaatcaccaaaaattgcatcagcagcatccctttttgtctttggtttaatcccacaaatatttgcctatgctataaactttccaatc |
16945327 |
T |
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| Q |
213 |
caaaaatttcttcaagcacaaagtatagttctaccaagtgcatacatttcagcag |
267 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
16945326 |
caaaaatttcttcaagcacaaagcatagtagcaccaagtgcatacatatcagcag |
16945272 |
T |
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