View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0831_low_56 (Length: 307)
Name: NF0831_low_56
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0831_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 35184951 - 35185134
Alignment:
| Q |
14 |
atatctgcaacaatccttaggcttttctttgtatgttgtagctttgcgaaattaagtacatgatttggataatagagactcatagttttacattcattta |
113 |
Q |
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| T |
35184951 |
atatctgcaacaacccttaggcttttctttgtatgttgttgctttgcgaaattaagtgtatgatttggataatagatactcatagttttatgttcattta |
35185050 |
T |
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| Q |
114 |
ccatctgaaata--tgtgttttcctatttgttgaacgtagccaggcgtgtacttttgtataactgctatgatcggctcattttt |
195 |
Q |
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| T |
35185051 |
ccatctgaaatatgtgtgttttcctatttgttgaaggtagccaggtgtgtaattttgtataactgctattactggctcattttt |
35185134 |
T |
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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 1393582 - 1393755
Alignment:
| Q |
41 |
tttgtatgttgtagctttgcgaaattaagtacatgatttggataatagagactcatagttttacattcatttaccatctgaaata--tgtgttttcctat |
138 |
Q |
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| T |
1393582 |
tttgtatgttgttgctttgtgaaattgagtatatgatttggataatagagactcatagtttcacgatcatttagcatctgaaatatgtgtgttttcctat |
1393681 |
T |
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| Q |
139 |
ttgttgaacgtagccaggcgtgtacttttgtataactgctatgatcggctcattttttgttatagtttatatttg |
213 |
Q |
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| T |
1393682 |
ttgttgaatgtagccagacgtgtacttttgtataactgctatgactggctca-tttttgttatagtctgtatttg |
1393755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 41460182 - 41460329
Alignment:
| Q |
148 |
gtagccaggcgtgtacttttgtataactgctatga----tcggctcattttttgttatagtttatatttgggtggtgtggtttctcgtaaactattttgt |
243 |
Q |
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| T |
41460182 |
gtagcgaggcgtgtacttttgtataactgctatgaatgattggctcattttt-gtcatagtctgtattggggtggtgtggtttctcctaaattattttgt |
41460280 |
T |
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| Q |
244 |
aacacatgattgctatagtactaaacgcatttgaaggctgatgctatat |
292 |
Q |
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| T |
41460281 |
aacatatgattgctatagtactaaatgcatttgaaggctgatgctatat |
41460329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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