View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0831_low_57 (Length: 305)

Name: NF0831_low_57
Description: NF0831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0831_low_57
NF0831_low_57
[»] chr4 (3 HSPs)
chr4 (29-292)||(7630939-7631202)
chr4 (29-161)||(37397083-37397215)
chr4 (29-150)||(29552075-29552196)
[»] chr1 (2 HSPs)
chr1 (29-153)||(48181398-48181522)
chr1 (29-148)||(35988843-35988962)
[»] chr5 (4 HSPs)
chr5 (39-148)||(27949696-27949805)
chr5 (90-161)||(15812528-15812599)
chr5 (29-161)||(36519703-36519835)
chr5 (90-161)||(15728872-15728943)
[»] scaffold0048 (1 HSPs)
scaffold0048 (46-161)||(54824-54939)
[»] chr6 (2 HSPs)
chr6 (186-218)||(32419509-32419541)
chr6 (186-218)||(32425350-32425382)
[»] chr2 (1 HSPs)
chr2 (46-141)||(35096289-35096384)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 7631202 - 7630939
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631202 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 7631103  T
Q  129 tgaatttcttcaacatatctgacaaaagaagcgccctacccggttagtcttttaatatcatacaaaaaagttactctaatattttagggaccggatacag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631102 tgaatttcttcaacatatctgacaaaagaagcgccctacccggttagtcttttaatatcatacaaaaaagttactctaatattttagggaccggatacag 7631003  T
Q  229 tcaacaatgatggtgtcagaatgtgaattggcaccatctgtcaggagttaagggttgtttgtct 292  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7631002 tcaacagtgatggtgtcaaaatgtgaattggcaccatctgtcaggagttaagggttgtttgtct 7630939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 37397215 - 37397083
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||||| ||||||||||| |||||||||||| ||||| | ||||||| || ||||| || ||||||||| ||||  |||  | |||||||||||||    
T  37397215 aaacataacagatcatggatcaactaaattaacttattcgtcttgttccttaagcagagccctgatctcttcacagttcctgaaccagaacaaacttttc 37397116  T
Q  129 tgaatttcttcaacatatctgacaaaagaagcg 161  Q
    |||||||||||||||||| | || |||||||||    
T  37397115 tgaatttcttcaacatatttaaccaaagaagcg 37397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 29552196 - 29552075
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||||| || || |||||||| |||||| |||||| | ||||||||  |||||| | ||||| ||||||| |||  | || |||| ||||||||||    
T  29552196 aaacataacagattattgatcagctcaattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagccggagcaaacttttc 29552097  T
Q  129 tgaatttcttcaacatatctga 150  Q
    ||| ||||||||| | ||||||    
T  29552096 tgattttcttcaataaatctga 29552075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 48181522 - 48181398
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||||||||||   |||||||||| ||| |||||||| |||||| || || ||||| || |||||||| || ||  || ||| || ||||||||||    
T  48181522 aaacataacatatcacatatcagctaaactaatttcttcgtctggttcattcagcagagccctgatctcttcgtaattcatgggtcagatcaaacttttc 48181423  T
Q  129 tgaatttcttcaacatatctgacaa 153  Q
    ||||||||||||| | |||||||||    
T  48181422 tgaatttcttcaataaatctgacaa 48181398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 35988962 - 35988843
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||| | ||||||||||| ||||| |||  |||| || |||| | | ||| |||||| | |||||||  || ||  |||| | || ||||||||||    
T  35988962 aaacataatagatcatggatcaactaaactaatgtctttgtctggtccttctagcagagctatgatctctttgtaattactgagccagatcaaacttttc 35988863  T
Q  129 tgaatttcttcaacatatct 148  Q
    ||||||||||||||||||||    
T  35988862 tgaatttcttcaacatatct 35988843  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 27949696 - 27949805
Alignment:
Q  39 tatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttctt 138  Q
    |||||||||||| ||||| |||||||||| | |||| |||  || ||||| || |||||||| ||||| ||| |||||| ||||||||| ||||||| ||    
T  27949696 tatcatggatcacctaaactaacttcttcctctggtccctccagcagagccctgatctcttcgtagttcttgggtcggatcaaacttttttgaatttttt 27949795  T
Q  139 caacatatct 148  Q
    ||||| ||||    
T  27949796 caacagatct 27949805  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 15812599 - 15812528
Alignment:
Q  90 ctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacatatctgacaaaagaagcg 161  Q
    ||||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||||||||||||| || ||||||    
T  15812599 ctaatctcttcgtagttcttgggtcggatcaaacttttatgaatttgttcaacatatctgaccaacgaagcg 15812528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 36519835 - 36519703
Alignment:
Q  29 aaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttc 128  Q
    |||||||| | |||| | |||||||||| ||| |||||||| | ||||||  |||||||| |   ||||||| |||||  |  || ||| ||||||||||    
T  36519835 aaacataatagatcacgaatcagctaaactaatttcttcgtctagttcctccagtagagcccagttctcttcgtagttcctaggttggatcaaacttttc 36519736  T
Q  129 tgaatttcttcaacatatctgacaaaagaagcg 161  Q
    ||||||||||||||| || |||| || ||||||    
T  36519735 tgaatttcttcaacagatttgaccaacgaagcg 36519703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 161
Target Start/End: Complemental strand, 15728943 - 15728872
Alignment:
Q  90 ctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacatatctgacaaaagaagcg 161  Q
    ||||||||||| ||||| ||  |||||| ||||||||| ||||||| |||||||||| |||| || ||||||    
T  15728943 ctaatctcttcgtagttcttcggtcggatcaaacttttatgaatttgttcaacatatatgaccaacgaagcg 15728872  T

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Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 54824 - 54939
Alignment:
Q  46 gatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaacata 145  Q
    ||||| |||||||||  ||||||| |||| | || | ||| || || |||||||| |||||  || |||||| ||||||||||||||||| |||||||||    
T  54824 gatcatctaaattaatgtcttcgtgtggtgcattcattagtgccctgatctcttcgtagttcctgcgtcggatcaaacttttctgaatttgttcaacata 54923  T
Q  146 tctgacaaaagaagcg 161  Q
    |||||| || ||||||    
T  54924 tctgaccaatgaagcg 54939  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 32419541 - 32419509
Alignment:
Q  186 tcatacaaaaaagttactctaatattttaggga 218  Q
    |||||||||||||||||||||||||||||||||    
T  32419541 tcatacaaaaaagttactctaatattttaggga 32419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 32425382 - 32425350
Alignment:
Q  186 tcatacaaaaaagttactctaatattttaggga 218  Q
    |||||||||||||||||||||||||||||||||    
T  32425382 tcatacaaaaaagttactctaatattttaggga 32425350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 35096384 - 35096289
Alignment:
Q  46 gatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcggaacaaacttttctgaatttcttcaa 141  Q
    ||||| ||||| ||| || ||||| |||||||| ||| ||||| || ||||| || ||||| |||  ||| | |||||||||||||||||||||||    
T  35096384 gatcaactaaactaattttttcgtctggttcctctagcagagccctgatctcctcgtagttcttgtatcgaatcaaacttttctgaatttcttcaa 35096289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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